The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut DJ Bertioli, SB Cannon, L Froenicke, G Huang, AD Farmer, EKS Cannon, ... Nature genetics 48 (4), 438-446, 2016 | 841 | 2016 |
Widespread natural variation of DNA methylation within angiosperms CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim, Q Li, NA Rohr, ... Genome biology 17, 1-19, 2016 | 496 | 2016 |
On the origin and evolutionary consequences of gene body DNA methylation AJ Bewick, L Ji, CE Niederhuth, EM Willing, BT Hofmeister, X Shi, L Wang, ... Proceedings of the National Academy of Sciences 113 (32), 9111-9116, 2016 | 292 | 2016 |
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ... Gigascience 7 (2), gix124, 2018 | 239 | 2018 |
Putting DNA methylation in context: from genomes to gene expression in plants CE Niederhuth, RJ Schmitz Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 149-156, 2017 | 177 | 2017 |
The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin, J Leebens-Mack, ... Genome biology 18, 1-13, 2017 | 144 | 2017 |
A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation PT Griffin, CE Niederhuth, RJ Schmitz G3: Genes, Genomes, Genetics 6 (9), 2773-2780, 2016 | 107 | 2016 |
Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2by RNA-Seq CE Niederhuth, OR Patharkar, JC Walker BMC genomics 14, 1-12, 2013 | 97 | 2013 |
Covering your bases: inheritance of DNA methylation in plant genomes CE Niederhuth, RJ Schmitz Molecular plant 7 (3), 472-480, 2014 | 95 | 2014 |
Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus KA Bird, CE Niederhuth, S Ou, M Gehan, JC Pires, Z Xiong, R VanBuren, ... New Phytologist 230 (1), 354-371, 2021 | 67 | 2021 |
Letting Go is Never Easy: Abscission and Receptor‐L ike Protein Kinases CE Niederhuth, SK Cho, K Seitz, JC Walker Journal of integrative plant biology 55 (12), 1251-1263, 2013 | 61 | 2013 |
Establishment, maintenance, and biological roles of non-CG methylation in plants SK Kenchanmane Raju, EJ Ritter, CE Niederhuth Essays in biochemistry 63 (6), 743-755, 2019 | 55 | 2019 |
Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement G Agarwal, H Kudapa, A Ramalingam, D Choudhary, P Sinha, V Garg, ... Functional & Integrative Genomics 20, 739-761, 2020 | 50 | 2020 |
The Dnmt3L ADD domain controls cytosine methylation establishment during spermatogenesis G Vlachogiannis, CE Niederhuth, S Tuna, A Stathopoulou, K Viiri, ... Cell reports 10 (6), 944-956, 2015 | 48 | 2015 |
pENCODE: a plant encyclopedia of DNA elements AK Lane, CE Niederhuth, L Ji, RJ Schmitz Annual review of genetics 48 (1), 49-70, 2014 | 40 | 2014 |
DVL genes play a role in the coordination of socket cell recruitment and differentiation ER Valdivia, D Chevalier, J Sampedro, I Taylor, CE Niederhuth, ... Journal of experimental botany 63 (3), 1405-1412, 2012 | 28 | 2012 |
Intertwined evolution of plant epigenomes and genomes EJ Ritter, CE Niederhuth Current Opinion in Plant Biology 61, 101990, 2021 | 17 | 2021 |
The molecular basis of kale domestication: transcriptional profiling of developing leaves provides new insights into the evolution of a Brassica oleracea vegetative morphotype T Arias, CE Niederhuth, P McSteen, JC Pires Frontiers in plant science 12, 637115, 2021 | 16* | 2021 |
From gigabyte to kilobyte: a bioinformatics protocol for mining large RNA-Seq transcriptomics data J Li, J Hou, L Sun, JM Wilkins, Y Lu, CE Niederhuth, BR Merideth, ... PloS one 10 (4), e0125000, 2015 | 13 | 2015 |
Epigenetic diversity and application to breeding SKK Raju, CE Niederhuth Advances in Botanical Research 88, 49-86, 2018 | 12 | 2018 |