Model-based analysis of ChIP-Seq (MACS) Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ... Genome biology 9, 1-9, 2008 | 15710 | 2008 |
ChIP-seq guidelines and practices used by the ENCODE and modENCODE consortia SG Landt, GK Marinov, P Kheradpour, A Kundaje, F Pauli, S Batzoglou, ... Genome Research 22 (9), 1813-1831, 2012 | 2243 | 2012 |
Identifying ChIP-seq enrichment using MACS J Feng, T Liu, B Qin, Y Zhang, XS Liu Nature Protocol, 2012 | 1651 | 2012 |
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010 | 1118 | 2010 |
EZH2 Oncogenic Activity in Castration-Resistant Prostate Cancer Cells Is Polycomb-Independent K Xu, ZJ Wu, AC Groner, HH He, C Cai, RT Lis, X Wu, EC Stack, M Loda, ... Science 338 (6113), 1465-1469, 2012 | 948 | 2012 |
Differential chromatin marking of introns and expressed exons by H3K36me3 P Kolasinska-Zwierz, T Down, I Latorre, T Liu, XS Liu, J Ahringer Nature genetics 41 (3), 376-381, 2009 | 801 | 2009 |
A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism D Feng, T Liu, Z Sun, A Bugge, SE Mullican, T Alenghat, XS Liu, MA Lazar Science 331 (6022), 1315, 2011 | 741 | 2011 |
Cistrome: an integrative platform for transcriptional regulation studies T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ... Genome Biology 12 (8), R83, 2011 | 737 | 2011 |
CEAS: cis-regulatory element annotation system H Shin, T Liu, AK Manrai, XS Liu Bioinformatics 25 (19), 2605-2606, 2009 | 502 | 2009 |
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ... Nucleic acids research, gkw983, 2016 | 484 | 2016 |
Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 419 | 2014 |
Practical guidelines for the comprehensive analysis of ChIP-seq data T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ... PLoS computational biology 9 (11), e1003326, 2013 | 348 | 2013 |
Broad chromosomal domains of histone modification patterns in C. elegans T Liu, A Rechtsteiner, TA Egelhofer, A Vielle, I Latorre, MS Cheung, ... Genome research 21 (2), 227-236, 2011 | 309 | 2011 |
Using MACS to Identify Peaks from ChIP‐Seq Data J Feng, T Liu, Y Zhang Current Protocols in Bioinformatics, 2011 | 272 | 2011 |
Use model-based analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein–DNA interactions in embryonic stem cells T Liu Stem cell transcriptional networks: methods and protocols, 81-95, 2014 | 228 | 2014 |
Systematic evaluation of factors influencing ChIP-seq fidelity Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ... Nature Methods, 2012 | 216 | 2012 |
A Comprehensive View of Nuclear Receptor Cancer Cistromes Q Tang, Y Chen, C Meyer, T Geistlinger, M Lupien, Q Wang, T Liu, ... Cancer Research, 2011 | 151 | 2011 |
NONCODE v2. 0: decoding the non-coding S He, C Liu, G Skogerbø, H Zhao, J Wang, T Liu, B Bai, Y Zhao, R Chen Nucleic acids research 36 (suppl 1), D170, 2008 | 143 | 2008 |
Sources of artifact in measurements of 6mA and 4mC abundance in eukaryotic genomic DNA ZK O’Brown, K Boulias, J Wang, SY Wang, NM O’Brown, Z Hao, ... BMC genomics 20, 1-15, 2019 | 139 | 2019 |
Integrative analyses of single-cell transcriptome and regulome using MAESTRO C Wang, D Sun, X Huang, C Wan, Z Li, Y Han, Q Qin, J Fan, X Qiu, Y Xie, ... Genome biology 21, 1-28, 2020 | 133 | 2020 |