A cellular census of human lungs identifies novel cell states in health and in asthma FA Vieira Braga, G Kar, M Berg, OA Carpaij, K Polanski, LM Simon, ... Nature medicine 25 (7), 1153-1163, 2019 | 754 | 2019 |
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data ATL Lun, S Riesenfeld, T Andrews, TP Dao, T Gomes, ... Genome biology 20, 1-9, 2019 | 719* | 2019 |
Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye, S Dhir, ... Cell 161 (3), 526-540, 2015 | 556 | 2015 |
Single-cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation RJ Miragaia, T Gomes, A Chomka, L Jardine, A Riedel, AN Hegazy, ... Immunity 50 (2), 493-504. e7, 2019 | 442 | 2019 |
Cross-tissue immune cell analysis reveals tissue-specific features in humans C Domínguez Conde, C Xu, LB Jarvis, DB Rainbow, SB Wells, T Gomes, ... Science 376 (6594), eabl5197, 2022 | 433 | 2022 |
Distinctive patterns of transcription and RNA processing for human lincRNAs M Schlackow, T Nojima, T Gomes, A Dhir, M Carmo-Fonseca, ... Molecular cell 65 (1), 25-38, 2017 | 270 | 2017 |
Distinct microbial and immune niches of the human colon KR James, T Gomes, R Elmentaite, N Kumar, EL Gulliver, HW King, ... Nature Immunology 21 (3), 343-353, 2020 | 217 | 2020 |
Gene expression variability across cells and species shapes innate immunity T Hagai, X Chen, RJ Miragaia, R Rostom, T Gomes, N Kunowska, ... Nature 563 (7730), 197-202, 2018 | 208 | 2018 |
Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohn’s disease R Elmentaite, ADB Ross, K Roberts, KR James, D Ortmann, T Gomes, ... Developmental cell 55 (6), 771-783. e5, 2020 | 196 | 2020 |
Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation J Henriksson, X Chen, T Gomes, U Ullah, KB Meyer, R Miragaia, G Duddy, ... Cell, 2019 | 166 | 2019 |
RNA polymerase II phosphorylated on CTD serine 5 interacts with the spliceosome during co-transcriptional splicing T Nojima, K Rebelo, T Gomes, AR Grosso, NJ Proudfoot, ... Molecular cell 72 (2), 369-379. e4, 2018 | 158 | 2018 |
Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide T Nojima, T Gomes, M Carmo-Fonseca, NJ Proudfoot Nature protocols 11 (3), 413-428, 2016 | 105 | 2016 |
Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation J Pramanik, X Chen, G Kar, J Henriksson, T Gomes, JE Park, K Natarajan, ... Genome medicine 10, 1-19, 2018 | 83 | 2018 |
Immunology driven by large-scale single-cell sequencing T Gomes, SA Teichmann, C Talavera-López Trends in immunology 40 (11), 1011-1021, 2019 | 72 | 2019 |
Tumor necrosis factor receptor family costimulation increases regulatory T‐cell activation and function via NF‐κB M Lubrano di Ricco, E Ronin, D Collares, J Divoux, S Grégoire, H Wajant, ... European journal of immunology 50 (7), 972-985, 2020 | 69 | 2020 |
Single-cell analyses of axolotl telencephalon organization, neurogenesis, and regeneration K Lust, A Maynard, T Gomes, JS Fleck, JG Camp, EM Tanaka, B Treutlein Science 377 (6610), eabp9262, 2022 | 52 | 2022 |
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development RJ Miragaia, X Zhang, T Gomes, V Svensson, T Ilicic, J Henriksson, G Kar, ... Scientific reports 8 (1), 685, 2018 | 49 | 2018 |
Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation YL Chen, T Gomes, CS Hardman, FA Vieira Braga, D Gutowska-Owsiak, ... Journal of Experimental Medicine 217 (3), e20190811, 2019 | 42 | 2019 |
Immune cell dynamics unfolded by single-cell technologies DJ Kunz, T Gomes, KR James Frontiers in immunology 9, 1435, 2018 | 38 | 2018 |
Developmental bifurcation of human T follicular regulatory cells S Kumar, VR Fonseca, F Ribeiro, AP Basto, A Água-Doce, M Monteiro, ... Science Immunology 6 (59), eabd8411, 2021 | 24 | 2021 |