Analysis of composition of microbiomes: a novel method for studying microbial composition S Mandal, W Van Treuren, RA White, M Eggesbø, R Knight, SD Peddada Microbial ecology in health and disease 26 (1), 27663, 2015 | 1908 | 2015 |
Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017 | 1741 | 2017 |
Analysis of compositions of microbiomes with bias correction H Lin, SD Peddada Nature communications 11 (1), 3514, 2020 | 1035 | 2020 |
450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy BR Joubert, SE Håberg, RM Nilsen, X Wang, SE Vollset, SK Murphy, ... Environmental health perspectives 120 (10), 1425-1431, 2012 | 835 | 2012 |
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome EM Hill‐Burns, JW Debelius, JT Morton, WT Wissemann, MR Lewis, ... Movement disorders 32 (5), 739-749, 2017 | 801 | 2017 |
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 681 | 2018 |
Growth of uterine leiomyomata among premenopausal black and white women SD Peddada, SK Laughlin, K Miner, JP Guyon, K Haneke, HL Vahdat, ... Proceedings of the National Academy of Sciences 105 (50), 19887-19892, 2008 | 471 | 2008 |
Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5: 27 S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... | 305 | 2017 |
Analysis of microbiome data in the presence of excess zeros A Kaul, S Mandal, O Davidov, SD Peddada Frontiers in microbiology 8, 2114, 2017 | 300 | 2017 |
Maternal plasma folate impacts differential DNA methylation in an epigenome-wide meta-analysis of newborns BR Joubert, HT Den Dekker, JF Felix, J Bohlin, S Ligthart, E Beckett, ... Nature communications 7 (1), 10577, 2016 | 265 | 2016 |
Gene selection and clustering for time-course and dose–response microarray experiments using order-restricted inference SD Peddada, EK Lobenhofer, L Li, CA Afshari, CR Weinberg, ... Bioinformatics 19 (7), 834-841, 2003 | 249 | 2003 |
Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice SO Reber, PH Siebler, NC Donner, JT Morton, DG Smith, JM Kopelman, ... Proceedings of the National Academy of Sciences 113 (22), E3130-E3139, 2016 | 244 | 2016 |
Analysis of microbial compositions: a review of normalization and differential abundance analysis H Lin, SD Peddada NPJ biofilms and microbiomes 6 (1), 60, 2020 | 192 | 2020 |
Development of gut microbiota in infants not exposed to medical interventions M Eggesbø, B Moen, S Peddada, D Baird, J Rugtveit, T Midtvedt, ... Apmis 119 (1), 17-35, 2011 | 187 | 2011 |
Confidence interval estimation subject to order restrictions JTG Hwang, SD Peddada The Annals of Statistics 22 (1), 67-93, 1994 | 175 | 1994 |
Meta-analyses on prevalence of selected Parkinson’s nonmotor symptoms before and after diagnosis H Chen, EJ Zhao, W Zhang, Y Lu, R Liu, X Huang, AJ Ciesielski-Jones, ... Translational neurodegeneration 4, 1-8, 2015 | 174 | 2015 |
The OECD program to validate the rat uterotrophic bioassay. Phase 2: dose-response studies. J Kanno, L Onyon, S Peddada, J Ashby, E Jacob, W Owens Environmental Health Perspectives 111 (12), 1530-1549, 2003 | 172 | 2003 |
Genetic pathways and mutation profiles of human cancers: site-and exposure-specific patterns IA Lea, MA Jackson, X Li, S Bailey, SD Peddada, JK Dunnick Carcinogenesis 28 (9), 1851-1858, 2007 | 151 | 2007 |
Interleukin-1β–induced mucin production in human airway epithelium is mediated by cyclooxygenase-2, prostaglandin E2 receptors, and cyclic AMP-protein kinase A signaling T Gray, P Nettesheim, C Loftin, JS Koo, J Bonner, S Peddada, ... Molecular Pharmacology 66 (2), 337-346, 2004 | 148 | 2004 |
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month N Iszatt, S Janssen, V Lenters, C Dahl, H Stigum, R Knight, S Mandal, ... Microbiome 7, 1-14, 2019 | 137 | 2019 |