Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts E Elyada, M Bolisetty, P Laise, WF Flynn, ET Courtois, RA Burkhart, ... Cancer discovery 9 (8), 1102-1123, 2019 | 1451 | 2019 |
Identification of a T follicular helper cell subset that drives anaphylactic IgE U Gowthaman, JS Chen, B Zhang, WF Flynn, Y Lu, W Song, J Joseph, ... Science 365 (6456), eaaw6433, 2019 | 388 | 2019 |
Mapping systemic lupus erythematosus heterogeneity at the single-cell level D Nehar-Belaid, S Hong, R Marches, G Chen, M Bolisetty, J Baisch, ... Nature immunology 21 (9), 1094-1106, 2020 | 264 | 2020 |
Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target N Abdelfattah, P Kumar, C Wang, JS Leu, WF Flynn, R Gao, DS Baskin, ... Nature communications 13 (1), 767, 2022 | 194 | 2022 |
Targeting p21Cip1 highly expressing cells in adipose tissue alleviates insulin resistance in obesity L Wang, B Wang, NS Gasek, Y Zhou, RL Cohn, DE Martin, W Zuo, ... Cell metabolism 34 (1), 75-89. e8, 2022 | 115 | 2022 |
CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence Y Zhao, Z Pan, S Namburi, A Pattison, A Posner, S Balachander, ... EBioMedicine 61, 2020 | 91 | 2020 |
Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness RM Levy, A Haldane, WF Flynn Current opinion in structural biology 43, 55-62, 2017 | 88 | 2017 |
Single-cell analysis of endometriosis reveals a coordinated transcriptional programme driving immunotolerance and angiogenesis across eutopic and ectopic tissues Y Tan, WF Flynn, S Sivajothi, D Luo, SB Bozal, M Davé, AA Luciano, ... Nature Cell Biology 24 (8), 1306-1318, 2022 | 76 | 2022 |
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ... Nature cell biology 25 (8), 1089-1100, 2023 | 61 | 2023 |
Structural propensities of kinase family proteins from a Potts model of residue co‐variation A Haldane, WF Flynn, P He, RSK Vijayan, RM Levy Protein Science 25 (8), 1378-1384, 2016 | 58 | 2016 |
Inference of epistatic effects leading to entrenchment and drug resistance in HIV-1 protease WF Flynn, A Haldane, BE Torbett, RM Levy Molecular Biology and Evolution, 10.1093/molbev/msx095, 2017 | 57 | 2017 |
Identification of EOMES-expressing spermatogonial stem cells and their regulation by PLZF M Sharma, A Srivastava, HE Fairfield, D Bergstrom, WF Flynn, RE Braun Elife 8, e43352, 2019 | 55 | 2019 |
Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus LE Mickelsen, WF Flynn, K Springer, L Wilson, EJ Beltrami, M Bolisetty, ... Elife 9, e58901, 2020 | 50 | 2020 |
Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease WF Flynn, MW Chang, Z Tan, G Oliveira, J Yuan, JF Okulicz, BE Torbett, ... PLoS computational biology 11 (4), e1004249, 2015 | 45 | 2015 |
Asynchronous replica exchange software for grid and heterogeneous computing E Gallicchio, J Xia, WF Flynn, B Zhang, S Samlalsingh, A Mentes, ... Computer physics communications 196, 236-246, 2015 | 42 | 2015 |
Effective renormalized multi-body interactions of harmonically confined ultracold neutral bosons PR Johnson, D Blume, XY Yin, WF Flynn, E Tiesinga New Journal of Physics 14 (5), 053037, 2012 | 38 | 2012 |
Hoohm/CITE-seq-Count: 1.4.2 P Roelli, bbimber, B Flynn, santiagorevale, G Gui https://zenodo.org/record/2590196, 2019 | 28 | 2019 |
Large‐scale asynchronous and distributed multidimensional replica exchange molecular simulations and efficiency analysis J Xia, WF Flynn, E Gallicchio, BW Zhang, P He, Z Tan, RM Levy Journal of computational chemistry 36 (23), 1772-1785, 2015 | 27 | 2015 |
Coevolutionary landscape of kinase family proteins: sequence probabilities and functional motifs A Haldane, WF Flynn, P He, RM Levy Biophysical journal 114 (1), 21-31, 2018 | 25 | 2018 |
A combined treatment of hydration and dynamical effects for the modeling of host–guest binding thermodynamics: the SAMPL5 blinded challenge RK Pal, K Haider, D Kaur, W Flynn, J Xia, RM Levy, T Taran, L Wickstrom, ... Journal of computer-aided molecular design 31, 29-44, 2017 | 23 | 2017 |