| Gene set analysis: challenges, opportunities, and future research F Maleki, K Ovens, DJ Hogan, AJ Kusalik Frontiers in genetics 11, 531777, 2020 | 175 | 2020 |
| Computational prediction of eukaryotic phosphorylation sites B Trost, A Kusalik Bioinformatics 27 (21), 2927-2935, 2011 | 172 | 2011 |
| Modeling gene expression from microarray expression data with state-space equations FX Wu, WJ Zhang, AJ Kusalik Biocomputing 2004, 581-592, 2003 | 130 | 2003 |
| Massive peptide sharing between viral and human proteomes D Kanduc, A Stufano, G Lucchese, A Kusalik Peptides 29 (10), 1755-1766, 2008 | 125 | 2008 |
| Peptidology: short amino acid modules in cell biology and immunology G Lucchese, A Stufano, B Trost, A Kusalik, D Kanduc Amino Acids 33, 703-707, 2007 | 106 | 2007 |
| Mycobacterium avium subsp. paratuberculosis inhibits gamma interferon-induced signaling in bovine monocytes: insights into the cellular mechanisms of Johne's disease RJ Arsenault, Y Li, K Bell, K Doig, A Potter, PJ Griebel, A Kusalik, ... Infection and immunity 80 (9), 3039-3048, 2012 | 98 | 2012 |
| No human protein is exempt from bacterial motifs, not even one B Trost, G Lucchese, A Stufano, M Bickis, A Kusalik, D Kanduc Self/nonself 1 (4), 328-334, 2010 | 96 | 2010 |
| Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root S Irani, B Trost, M Waldner, N Nayidu, J Tu, AJ Kusalik, CD Todd, Y Wei, ... BMC genomics 19, 1-19, 2018 | 87 | 2018 |
| Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools B Trost, M Bickis, A Kusalik Immunome research 3, 1-10, 2007 | 85 | 2007 |
| Systems kinomics demonstrates Congo Basin monkeypox virus infection selectively modulates host cell signaling responses as compared to West African monkeypox virus J Kindrachuk, R Arsenault, A Kusalik, KN Kindrachuk, B Trost, S Napper, ... Molecular & Cellular Proteomics 11 (6), 2012 | 84 | 2012 |
| PIIKA 2: an expanded, web-based platform for analysis of kinome microarray data B Trost, J Kindrachuk, P Määttänen, S Napper, A Kusalik PloS one 8 (11), e80837, 2013 | 81 | 2013 |
| Grading pistachio nuts using a neural network approach A Ghazanfari, J Irudayaraj, A Kusalik Transactions of the ASAE 39 (6), 2319-2324, 1996 | 80 | 1996 |
| A systematic approach for analysis of peptide array kinome data Y Li, RJ Arsenault, B Trost, J Slind, PJ Griebel, S Napper, A Kusalik Science Signaling 5 (220), pl2-pl2, 2012 | 71 | 2012 |
| Machine vision grading of pistachio nuts using Fourier descriptors A Ghazanfari, J Irudayaraj, A Kusalik, M Romaniuk Journal of agricultural engineering research 68 (3), 247-252, 1997 | 65 | 1997 |
| Ebola virus modulates transforming growth factor β signaling and cellular markers of mesenchyme-like transition in hepatocytes J Kindrachuk, V Wahl-Jensen, D Safronetz, B Trost, T Hoenen, ... Journal of virology 88 (17), 9877-9892, 2014 | 63 | 2014 |
| Altered Toll-like receptor 9 signaling in Mycobacterium avium subsp. paratuberculosis-infected bovine monocytes reveals potential therapeutic targets RJ Arsenault, Y Li, P Maattanen, E Scruten, K Doig, A Potter, P Griebel, ... Infection and immunity 81 (1), 226-237, 2013 | 59 | 2013 |
| Size matters: how sample size affects the reproducibility and specificity of gene set analysis F Maleki, K Ovens, I McQuillan, AJ Kusalik Human genomics 13, 1-12, 2019 | 54 | 2019 |
| Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights B Trost, A Kusalik Bioinformatics 29 (6), 686-694, 2013 | 54 | 2013 |
| Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates E Pérez‐López, MM Hossain, J Tu, M Waldner, CD Todd, AJ Kusalik, ... journal of eukaryotic microbiology 67 (3), 337-351, 2020 | 49 | 2020 |
| A better sequence-read simulator program for metagenomics S Johnson, B Trost, JR Long, V Pittet, A Kusalik BMC bioinformatics 15, 1-10, 2014 | 46 | 2014 |
