| Performance assessment of topologically diverse power systems subjected to hurricane events J Winkler, L Dueñas-Osorio, R Stein, D Subramanian Reliability Engineering & System Safety 95 (4), 323-336, 2010 | 293 | 2010 |
| Visualizing evolution in real time to determine the molecular mechanisms of n-butanol tolerance in Escherichia coli LH Reyes, MP Almario, J Winkler, MM Orozco, KC Kao Metabolic engineering 14 (5), 579-590, 2012 | 128 | 2012 |
| Recent advances in the evolutionary engineering of industrial biocatalysts JD Winkler, KC Kao Genomics 104 (6), 406-411, 2014 | 109 | 2014 |
| Bacterial recombineering: genome engineering via phage-based homologous recombination G Pines, EF Freed, JD Winkler, RT Gill ACS synthetic biology 4 (11), 1176-1185, 2015 | 100 | 2015 |
| Evolved osmotolerant Escherichia coli mutants frequently exhibit defective N-acetylglucosamine catabolism and point mutations in cell shape-regulating protein MreB JD Winkler, C Garcia, M Olson, E Callaway, KC Kao Applied and environmental microbiology 80 (12), 3729-3740, 2014 | 72 | 2014 |
| Transcriptional Analysis of Lactobacillus brevis to N-Butanol and Ferulic Acid Stress Responses J Winkler, KC Kao PloS one 6 (8), e21438, 2011 | 69 | 2011 |
| Interface network models for complex urban infrastructure systems J Winkler, L Dueñas-Osorio, R Stein, D Subramanian Journal of Infrastructure Systems 17 (4), 138-150, 2011 | 67 | 2011 |
| Adaptive laboratory evolution for strain engineering J Winkler, LH Reyes, KC Kao Systems Metabolic Engineering, 211-222, 2013 | 45 | 2013 |
| The LASER database: Formalizing design rules for metabolic engineering JD Winkler, AL Halweg-Edwards, RT Gill Metabolic Engineering Communications 2, 30-38, 2015 | 44 | 2015 |
| Novel Escherichia coli hybrids with enhanced butanol tolerance J Winkler, M Rehmann, KC Kao Biotechnology letters 32 (7), 915-920, 2010 | 40 | 2010 |
| Multiplex navigation of global regulatory networks (MINR) in yeast for improved ethanol tolerance and production R Liu, L Liang, A Choudhury, AD Garst, CA Eckert, EJ Oh, J Winkler, ... Metabolic engineering 51, 50-58, 2019 | 32 | 2019 |
| Tools for developing tolerance to toxic chemicals in microbial systems and perspectives on moving the field forward and into the industrial setting GL Peabody, J Winkler, KC Kao Current Opinion in Chemical Engineering 6, 9-17, 2014 | 31 | 2014 |
| Harnessing recombination to speed adaptive evolution in Escherichia coli J Winkler, KC Kao Metabolic engineering 14 (5), 487-495, 2012 | 31 | 2012 |
| Genome-wide tuning of protein expression levels to rapidly engineer microbial traits EF Freed, JD Winkler, SJ Weiss, AD Garst, VK Mutalik, AP Arkin, R Knight, ... ACS synthetic biology 4 (11), 1244-1253, 2015 | 27 | 2015 |
| Visualizing evolution in real-time method for strain engineering LH Reyes, J Winkler, KC Kao Frontiers in microbiology 3, 198, 2012 | 26 | 2012 |
| Refactoring the genetic code for increased evolvability G Pines, JD Winkler, A Pines, RT Gill MBio 8 (6), 2017 | 22 | 2017 |
| Benefits of a recombination-proficient Escherichia coli system for adaptive laboratory evolution G Peabody, J Winkler, W Fountain, DA Castro, E Leiva-Aravena, KC Kao Applied and environmental microbiology 82 (22), 6736-6747, 2016 | 17 | 2016 |
| The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes JD Winkler, AL Halweg-Edwards, KE Erickson, A Choudhury, G Pines, ... ACS synthetic biology 5 (12), 1566-1577, 2016 | 17 | 2016 |
| The Tolerome: A Database of Transcriptome-Level Contributions to Diverse Escherichia coli Resistance and Tolerance Phenotypes KE Erickson, JD Winkler, DT Nguyen, RT Gill, A Chatterjee ACS synthetic biology 6 (12), 2302-2315, 2017 | 15 | 2017 |
| Insights on Osmotic Tolerance Mechanisms in Escherichia coli Gained from an rpoC Mutation Y Guo, J Winkler, KC Kao Bioengineering 4 (3), 61, 2017 | 15 | 2017 |
