How a protein searches for its site on DNA: the mechanism of facilitated diffusion L Mirny, M Slutsky, Z Wunderlich, A Tafvizi, J Leith, A Kosmrlj Journal of Physics A: Mathematical and Theoretical 42 (43), 434013, 2009 | 388 | 2009 |
Different gene regulation strategies revealed by analysis of binding motifs Z Wunderlich, LA Mirny Trends in genetics 25 (10), 434-440, 2009 | 332 | 2009 |
How gene order is influenced by the biophysics of transcription regulation G Kolesov, Z Wunderlich, ON Laikova, MS Gelfand, LA Mirny Proceedings of the National Academy of Sciences 104 (35), 13948-13953, 2007 | 207 | 2007 |
Enhancer redundancy in development and disease EZ Kvon, R Waymack, MG Elabd, Z Wunderlich Nature Reviews Genetics, 1-13, 2021 | 165 | 2021 |
Spatial effects on the speed and reliability of protein–DNA search Z Wunderlich, LA Mirny Nucleic acids research 36 (11), 3570-3578, 2008 | 134 | 2008 |
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiaegene function W Tian, LV Zhang, M Taşan, FD Gibbons, OD King, J Park, Z Wunderlich, ... Genome biology 9, 1-21, 2008 | 113 | 2008 |
Depleting Gene Activities in Early Drosophila Embryos with the “Maternal-Gal4–shRNA” System MV Staller, D Yan, S Randklev, MD Bragdon, ZB Wunderlich, R Tao, ... Genetics 193 (1), 51-61, 2013 | 111 | 2013 |
Using the topology of metabolic networks to predict viability of mutant strains Z Wunderlich, LA Mirny Biophysical journal 91 (6), 2304-2311, 2006 | 103 | 2006 |
SPINE 2: a system for collaborative structural proteomics within a federated database framework CS Goh, N Lan, N Echols, SM Douglas, D Milburn, P Bertone, R Xiao, ... Nucleic acids research 31 (11), 2833-2838, 2003 | 88 | 2003 |
Krüppel expression levels are maintained through compensatory evolution of shadow enhancers Z Wunderlich, MDJ Bragdon, BJ Vincent, JA White, J Estrada, AH DePace Cell reports 12 (11), 1740-1747, 2015 | 74 | 2015 |
Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity J Park, J Estrada, G Johnson, BJ Vincent, C Ricci-Tam, MDJ Bragdon, ... Elife 8, e41266, 2019 | 62 | 2019 |
A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila CC Fowlkes, KB Eckenrode, MD Bragdon, M Meyer, Z Wunderlich, ... PLoS Genetics 7 (10), e1002346, 2011 | 58 | 2011 |
Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo MV Staller, BJ Vincent, MDJ Bragdon, T Lydiard-Martin, Z Wunderlich, ... Proceedings of the National Academy of Sciences 112 (3), 785-790, 2015 | 55 | 2015 |
Assessing model accuracy using the homology modeling automatically software A Bhattacharya, Z Wunderlich, D Monleon, R Tejero, GT Montelione Proteins: Structure, Function, and Bioinformatics 70 (1), 105-118, 2008 | 53 | 2008 |
Shadow enhancers can suppress input transcription factor noise through distinct regulatory logic R Waymack, A Fletcher, G Enciso, Z Wunderlich Elife 9, e59351, 2020 | 51 | 2020 |
An enhancer's length and composition are shaped by its regulatory task L Li, Z Wunderlich Frontiers in genetics 8, 267395, 2017 | 38 | 2017 |
Yearly planning meetings: individualized development plans aren’t just more paperwork BJ Vincent, C Scholes, MV Staller, Z Wunderlich, J Estrada, J Park, ... Molecular cell 58 (5), 718-721, 2015 | 32 | 2015 |
Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos BJ Vincent, MV Staller, F Lopez-Rivera, MDJ Bragdon, ECG Pym, ... PLoS genetics 14 (9), e1007644, 2018 | 30 | 2018 |
Modeling transcriptional networks in Drosophila development at multiple scales Z Wunderlich, AH DePace Current opinion in genetics & development 21 (6), 711-718, 2011 | 30 | 2011 |
Dissecting sources of quantitative gene expression pattern divergence between Drosophila species Z Wunderlich, MD Bragdon, KB Eckenrode, T Lydiard‐Martin, ... Molecular systems biology 8 (1), 604, 2012 | 29 | 2012 |