RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 517 | 2013 |
Regulation by transcription factors in bacteria: beyond description E Balleza, LN Lopez-Bojorquez, A Martínez-Antonio, O Resendis-Antonio, ... FEMS microbiology reviews 33 (1), 133-151, 2008 | 258 | 2008 |
Clinical and immunological factors that distinguish COVID-19 from pandemic influenza A (H1N1) JA Choreño-Parra, LA Jimenez-Alvarez, A Cruz-Lagunas, ... Frontiers in immunology 12, 593595, 2021 | 46 | 2021 |
Transcription factors in Escherichia coli prefer the holo conformation YI Balderas-Martínez, M Savageau, H Salgado, E Pérez-Rueda, E Morett, ... PloS one 8 (6), e65723, 2013 | 39 | 2013 |
Overview of the interactive task in BioCreative V Q Wang, S S. Abdul, L Almeida, S Ananiadou, YI Balderas-Martínez, ... Database 2016, baw119, 2016 | 38 | 2016 |
Transforming growth factor beta 1 induces methylation changes in lung fibroblasts M Negreros, JS Hagood, CR Espinoza, YI Balderas-Martínez, M Selman, ... PloS one 14 (10), e0223512, 2019 | 25 | 2019 |
R-spondin-2 is upregulated in idiopathic pulmonary fibrosis and affects fibroblast behavior A Munguía-Reyes, YI Balderas-Martínez, C Becerril, M Checa, R Ramírez, ... American journal of respiratory cell and molecular biology 59 (1), 65-76, 2018 | 25 | 2018 |
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12 S Gama-Castro, F Rinaldi, A Lopez-Fuentes, YI Balderas-Martínez, ... Database 2014, bau049, 2014 | 23 | 2014 |
PulmonDB: a curated lung disease gene expression database AB Villaseñor-Altamirano, M Moretto, M Maldonado, A Zayas-Del Moral, ... Scientific reports 10 (1), 514, 2020 | 20 | 2020 |
The functional landscape bound to the transcription factors of Escherichia coli K-12 E Pérez-Rueda, S Tenorio-Salgado, A Huerta-Saquero, ... Computational Biology and Chemistry 58, 93-103, 2015 | 20 | 2015 |
Circulating microRNA signature associated to interstitial lung abnormalities in respiratory asymptomatic subjects B Ortiz-Quintero, I Buendía-Roldán, EG Ramírez-Salazar, ... Cells 9 (6), 1556, 2020 | 15 | 2020 |
Inflammatory pathways are upregulated in the nasal epithelium in patients with idiopathic pulmonary fibrosis MA Sala, YI Balderas-Martínez, I Buendía-Roldan, H Abdala-Valencia, ... Respiratory Research 19, 1-10, 2018 | 14 | 2018 |
Cyclic attractors are critical for macrophage differentiation, heterogeneity, and plasticity MA Ordaz-Arias, L Díaz-Alvarez, J Zúñiga, ME Martinez-Sánchez, ... Frontiers in Molecular Biosciences 9, 807228, 2022 | 11 | 2022 |
Accelerated aging induced by deficiency of Zmpste24 protects old mice to develop bleomycin-induced pulmonary fibrosis J Calyeca, YI Balderas-Martínez, R Olmos, R Jasso, V Maldonado, ... Aging (Albany NY) 10 (12), 3881, 2018 | 8 | 2018 |
Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways J Calyeca, YI Balderas-Martínez, M Selman, A Pardo Aging (Albany NY) 13 (9), 12378, 2021 | 7 | 2021 |
Effect of Hypoxia in the Transcriptomic Profile of Lung Fibroblasts from Idiopathic Pulmonary Fibrosis Y Romero, YI Balderas-Martínez, MA Vargas-Morales, ... Cells 11 (19), 3014, 2022 | 5 | 2022 |
Lack of ZNF365 drives senescence and exacerbates experimental lung fibrosis J Urista, M Maldonado, F Toscano-Marquez, R Ramírez, ... Cells 11 (18), 2848, 2022 | 5 | 2022 |
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis YI Balderas-Martínez, F Rinaldi, G Contreras, H Solano-Lira, ... Database 2017, bax030, 2017 | 4 | 2017 |
Assisted curation of growth conditions that affect gene expression in e. coli k-12 SC Gama, F Rinaldi Proceedings of the Fourth BioCreative Challenge Evaluation Workshop 1, 214-218, 2013 | 4 | 2013 |
Review of gene expression using microarray and RNA-seq AB Villaseñor-Altamirano, YI Balderas-Martínez, A Medina-Rivera Rigor and Reproducibility in Genetics and Genomics, 159-187, 2024 | 3 | 2024 |