| A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 2011 | 1283 | 2011 |
| COBRApy: constraints-based reconstruction and analysis for python A Ebrahim, JA Lerman, BO Palsson, DR Hyduke BMC systems biology 7, 1-6, 2013 | 1180 | 2013 |
| BiGG Models: A platform for integrating, standardizing and sharing genome-scale models ZA King, J Lu, A Dräger, P Miller, S Federowicz, JA Lerman, A Ebrahim, ... Nucleic acids research 44 (D1), D515-D522, 2016 | 919 | 2016 |
| Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models NE Lewis, KK Hixson, TM Conrad, JA Lerman, P Charusanti, AD Polpitiya, ... Molecular systems biology 6 (1), 2010 | 793 | 2010 |
| Genome‐scale models of metabolism and gene expression extend and refine growth phenotype prediction EJ O'Brien*, JA Lerman*, RL Chang, DR Hyduke, BØ Palsson Molecular systems biology 9 (1), 2013 | 522 | 2013 |
| In silico method for modelling metabolism and gene product expression at genome scale JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ... Nature communications 3 (1), 929, 2012 | 344 | 2012 |
| Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ... Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013 | 319 | 2013 |
| Network context and selection in the evolution to enzyme specificity H Nam, NE Lewis, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson Science 337 (6098), 1101-1104, 2012 | 308 | 2012 |
| Multi-omic data integration enables discovery of hidden biological regularities A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ... Nature communications 7 (1), 13091, 2016 | 166 | 2016 |
| Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale JK Liu, EJ O’Brien, JA Lerman, K Zengler, BO Palsson, AM Feist BMC systems biology 8, 1-15, 2014 | 110 | 2014 |
| Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence SJH Sui, R Lo, AR Fernandes, MDG Caulfield, JA Lerman, L Xie, ... International journal of antimicrobial agents 40 (3), 246-251, 2012 | 104 | 2012 |
| Determining the control circuitry of redox metabolism at the genome-scale S Federowicz, D Kim, A Ebrahim, J Lerman, H Nagarajan, B Cho, ... PLoS genetics 10 (4), e1004264, 2014 | 83 | 2014 |
| Do genome‐scale models need exact solvers or clearer standards? A Ebrahim, E Almaas, E Bauer, A Bordbar, AP Burgard, RL Chang, ... Molecular systems biology 11 (10), 831, 2015 | 64 | 2015 |
| An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92 P Charusanti, S Chauhan, K McAteer, JA Lerman, DR Hyduke, VL Motin, ... BMC systems biology 5, 1-13, 2011 | 53 | 2011 |
| The genome organization of Thermotoga maritima reflects its lifestyle H Latif*, JA Lerman*, VA Portnoy, Y Tarasova, H Nagarajan, ... PLoS genetics 9 (4), e1003485, 2013 | 52 | 2013 |
| Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion … NL Fong, JA Lerman, I Lam, BO Palsson, P Charusanti FEMS microbiology letters 342 (1), 62-69, 2013 | 15 | 2013 |
| Multifunctional neck brace P Gehlbach, B Benson, H Cortes, M Davenport, R Harrison, K Hwang, ... US Patent App. 11/798,041, 2008 | 6 | 2008 |
| An automated scientist to design and optimize microbial strains for the industrial production of small molecules AH Singh, BB Kaufmann-Malaga, JA Lerman, DP Dougherty, Y Zhang, ... bioRxiv, 2023.01. 03.521657, 2023 | 5 | 2023 |
| Biosynthesis of compounds in yeast J Walter, JA Lerman, M Leavell, B Yap US Patent 10,519,475, 2019 | 3 | 2019 |
| Topping off a multiscale balancing act J Lerman, BO Palsson Science 330 (6007), 1058-1059, 2010 | 1 | 2010 |
Nathan E LewisProfessor, University of California, San Diego在 ucsd.edu 的电子邮件经过验证
