| Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype O Jaillon, JM Aury, F Brunet, JL Petit, N Stange-Thomann, E Mauceli, ... Nature 431 (7011), 946-957, 2004 | 2175 | 2004 |
| The protein–protein interaction map of Helicobacter pylori JC Rain, L Selig, H De Reuse, V Battaglia, C Reverdy, S Simon, ... Nature 409 (6817), 211-215, 2001 | 1439 | 2001 |
| Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia JM Aury, O Jaillon, L Duret, B Noel, C Jubin, BM Porcel, B Ségurens, ... Nature 444 (7116), 171-178, 2006 | 919 | 2006 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 792 | 2010 |
| Genome-scale models of bacterial metabolism: reconstruction and applications M Durot, PY Bourguignon, V Schachter FEMS microbiology reviews 33 (1), 164-190, 2008 | 416 | 2008 |
| A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1 V De Berardinis, D Vallenet, V Castelli, M Besnard, A Pinet, C Cruaud, ... Molecular systems biology 4 (1), 174, 2008 | 366 | 2008 |
| Protein-protein interaction map inference using interacting domain profile pairs J Wojcik, V Schächter Bioinformatics 17 (suppl_1), S296-S305, 2001 | 303 | 2001 |
| Modeling and querying biomolecular interaction networks N Chabrier-Rivier, M Chiaverini, V Danos, F Fages, V Schächter Theoretical Computer Science 325 (1), 25-44, 2004 | 266 | 2004 |
| Translational control of intron splicing in eukaryotes O Jaillon, K Bouhouche, JF Gout, JM Aury, B Noel, B Saudemont, ... Nature 451 (7176), 359-362, 2008 | 252 | 2008 |
| Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data M Durot, F Le Fèvre, V de Berardinis, A Kreimeyer, D Vallenet, C Combe, ... BMC systems biology 2, 1-23, 2008 | 108 | 2008 |
| Whole genome sequence comparisons and “full-length” cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation V Castelli, JM Aury, O Jaillon, P Wincker, C Clepet, M Menard, C Cruaud, ... Genome research 14 (3), 406-413, 2004 | 95 | 2004 |
| Core and Panmetabolism in Escherichia coli G Vieira, V Sabarly, PY Bourguignon, M Durot, F Le Fevre, D Mornico, ... Journal of bacteriology 193 (6), 1461-1472, 2011 | 76 | 2011 |
| From the analysis of protein complexes to proteome-wide linkage maps P Legrain, JL Jestin, V Schächter Current opinion in biotechnology 11 (4), 402-407, 2000 | 57 | 2000 |
| BioPAX–Biological Pathways Exchange language G Bader, E Brauner, M Cary, R Goldberg, C Hogue, P Karp, T Klein, ... BioPAX workgroup, 2005 | 46* | 2005 |
| CycSim—an online tool for exploring and experimenting with genome-scale metabolic models F Le Fèvre, S Smidtas, C Combe, M Durot, F d'Alché-Buc, V Schachter Bioinformatics 25 (15), 1987-1988, 2009 | 32 | 2009 |
| Method for organizing and querying a genomic and proteomic databases P Durand, J Wojcik, V Schachter US Patent App. 10/154,228, 2003 | 29 | 2003 |
| Computational Methods in Systems Biology V Danos, V Schachter Springer Berlin/Heidelberg., 2004 | 26* | 2004 |
| Proteomic databases and software on the web J Wojcik, V Schächter Briefings in bioinformatics 1 (3), 250-259, 2000 | 23 | 2000 |
| Protein-interaction networks: from experiments to analysis V Schächter Drug discovery today 7 (11), S48-S54, 2002 | 22 | 2002 |
| Numerous Novel Annotations of the Human Genome Sequence Supported by a 5′-End–Enriched cDNA Collection BM Porcel, O Delfour, V Castelli, V De Berardinis, L Friedlander, ... Genome research 14 (3), 463-471, 2004 | 19 | 2004 |
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