VDJdb: a curated database of T-cell receptor sequences with known antigen specificity M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ... Nucleic acids research 46 (D1), D419-D427, 2018 | 435 | 2018 |
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ... Nucleic Acids Research 48 (D1), D1057-D1062, 2020 | 326 | 2020 |
Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection RA Bull, F Luciani, K McElroy, S Gaudieri, ST Pham, A Chopra, ... PLoS pathogens 7 (9), e1002243, 2011 | 299 | 2011 |
High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ... Nature communications 10 (1), 3120, 2019 | 279 | 2019 |
Effects and interactions in an environmentally relevant mixture of pharmaceuticals F Pomati, C Orlandi, M Clerici, F Luciani, E Zuccato Toxicological sciences 102 (1), 129-137, 2008 | 275 | 2008 |
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ... Nature communications 11 (1), 6272, 2020 | 242 | 2020 |
Human CD8+ T cell cross-reactivity across influenza A, B and C viruses M Koutsakos, PT Illing, THO Nguyen, NA Mifsud, JC Crawford, S Rizzetto, ... Nature immunology 20 (5), 613-625, 2019 | 209 | 2019 |
A liver capsular network of monocyte-derived macrophages restricts hepatic dissemination of intraperitoneal bacteria by neutrophil recruitment F Sierro, M Evrard, S Rizzetto, M Melino, AJ Mitchell, M Florido, L Beattie, ... Immunity 47 (2), 374-388. e6, 2017 | 199 | 2017 |
GemSIM: general, error-model based simulator of next-generation sequencing data KE McElroy, F Luciani, T Thomas BMC genomics 13, 1-9, 2012 | 199 | 2012 |
The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis F Luciani, SA Sisson, H Jiang, AR Francis, MM Tanaka Proceedings of the National Academy of Sciences 106 (34), 14711-14715, 2009 | 198 | 2009 |
Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data MM Tanaka, AR Francis, F Luciani, SA Sisson Genetics 173 (3), 1511-1520, 2006 | 190 | 2006 |
SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective M Sironi, SE Hasnain, B Rosenthal, T Phan, F Luciani, MA Shaw, ... Infection, genetics and evolution 84, 104384, 2020 | 154 | 2020 |
Atypical B cells are part of an alternative lineage of B cells that participates in responses to vaccination and infection in humans HJ Sutton, R Aye, AH Idris, R Vistein, E Nduati, O Kai, J Mwacharo, X Li, ... Cell reports 34 (6), 2021 | 146 | 2021 |
Inhibitors of the hepatitis C virus polymerase; mode of action and resistance AA Eltahla, F Luciani, PA White, AR Lloyd, RA Bull Viruses 7 (10), 5206-5224, 2015 | 145 | 2015 |
Contribution of intra-and interhost dynamics to norovirus evolution RA Bull, JS Eden, F Luciani, K McElroy, WD Rawlinson, PA White Journal of virology 86 (6), 3219-3229, 2012 | 144 | 2012 |
Linking the T cell receptor to the single cell transcriptome in antigen‐specific human T cells AA Eltahla, S Rizzetto, MR Pirozyan, BD Betz‐Stablein, V Venturi, ... Immunology and cell biology 94 (6), 604-611, 2016 | 121 | 2016 |
Viral quasispecies assembly via maximal clique enumeration A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel PLoS computational biology 10 (3), e1003515, 2014 | 121 | 2014 |
Investigation of product-derived lymphoma following infusion of piggyBac-modified CD19 chimeric antigen receptor T cells KP Micklethwaite, K Gowrishankar, BS Gloss, Z Li, JA Street, L Moezzi, ... Blood, The Journal of the American Society of Hematology 138 (16), 1391-1405, 2021 | 119 | 2021 |
Clonally diverse CD38+HLA-DR+CD8+ T cells persist during fatal H7N9 disease Z Wang, L Zhu, THO Nguyen, Y Wan, S Sant, SM Quiñones-Parra, ... Nature communications 9 (1), 824, 2018 | 117 | 2018 |
Epidemiological and clinical consequences of within-host evolution S Alizon, F Luciani, RR Regoes Trends in microbiology 19 (1), 24-32, 2011 | 114 | 2011 |