DendroPy: a Python library for phylogenetic computing J Sukumaran, MT Holder Bioinformatics 26 (12), 1569-1571, 2010 | 1669 | 2010 |
Phylogeny estimation: traditional and Bayesian approaches M Holder, PO Lewis Nature reviews genetics 4 (4), 275-284, 2003 | 933 | 2003 |
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ... Systematic biology 61 (1), 170-173, 2012 | 674 | 2012 |
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ... Systematic biology 61 (1), 90, 2012 | 404 | 2012 |
Polytomies and Bayesian phylogenetic inference PO Lewis, MT Holder, KE Holsinger Systematic biology 54 (2), 241-253, 2005 | 346 | 2005 |
Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness V Edgcomb, W Orsi, J Bunge, S Jeon, R Christen, C Leslin, M Holder, ... The ISME journal 5 (8), 1344-1356, 2011 | 252 | 2011 |
The interface of protein structure, protein biophysics, and molecular evolution DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ... Protein Science 21 (6), 769-785, 2012 | 231 | 2012 |
The posterior and the prior in Bayesian phylogenetics ME Alfaro, MT Holder Annu. Rev. Ecol. Evol. Syst. 37, 19-42, 2006 | 227 | 2006 |
Difficulties in detecting hybridization MT Holder, JA Anderson, AK Holloway Systematic Biology 50 (6), 978-982, 2001 | 198 | 2001 |
Detection of multiple paternity in the Kemp's ridley sea turtle with limited sampling Kichler, Holder, Owens Molecular Ecology 8 (5), 819-830, 1999 | 152 | 1999 |
Explaining species distribution patterns through hierarchical modeling AE Gelfand, M Holder, A Latimer, PO Lewis, AG Rebelo, JA Silander Jr, ... | 150 | 2006 |
Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference MJ Brauer, MT Holder, LA Dries, DJ Zwickl, PO Lewis, DM Hillis Molecular Biology and Evolution 19 (10), 1717-1726, 2002 | 118 | 2002 |
A Dirichlet process prior for estimating lineage-specific substitution rates TA Heath, MT Holder, JP Huelsenbeck Molecular biology and evolution 29 (3), 939-955, 2012 | 111 | 2012 |
NeXML: rich, extensible, and verifiable representation of comparative data and metadata RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ... Systematic biology 61 (4), 675-689, 2012 | 109 | 2012 |
The big questions for biodiversity informatics AT Peterson, S Knapp, R Guralnick, J Soberón, MT Holder Systematics and biodiversity 8 (2), 159-168, 2010 | 107 | 2010 |
The phylogenetic position of Myxozoa: exploring conflicting signals in phylogenomic and ribosomal data sets NM Evans, MT Holder, MS Barbeitos, B Okamura, P Cartwright Molecular biology and evolution 27 (12), 2733-2746, 2010 | 100 | 2010 |
Two living species of coelacanths? MT Holder, MV Erdmann, TP Wilcox, RL Caldwell, DM Hillis Proceedings of the National Academy of Sciences 96 (22), 12616-12620, 1999 | 98 | 1999 |
A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics MT Holder, J Sukumaran, PO Lewis Systematic biology 57 (5), 814-821, 2008 | 97 | 2008 |
Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics DJ Zwickl, MT Holder Systematic Biology 53 (6), 877-888, 2004 | 92 | 2004 |
Evidence for Climate‐driven Diversification? A Caution For Interpreting ABC Inferences of Simultaneous Historical Events JR Oaks, J Sukumaran, JA Esselstyn, CW Linkem, CD Siler, MT Holder, ... Evolution 67 (4), 991-1010, 2013 | 79 | 2013 |