| pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis P Salvy, G Fengos, M Ataman, T Pathier, KC Soh, V Hatzimanikatis Bioinformatics 35 (1), 167-169, 2019 | 92 | 2019 |
| The ETFL formulation allows multi-omics integration in thermodynamics-compliant metabolism and expression models P Salvy, V Hatzimanikatis Nature communications 11 (1), 30, 2020 | 90 | 2020 |
| A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics O Oftadeh, P Salvy, M Masid, M Curvat, L Miskovic, V Hatzimanikatis Nature communications 12 (1), 4790, 2021 | 59 | 2021 |
| Emergence of diauxie as an optimal growth strategy under resource allocation constraints in cellular metabolism P Salvy, V Hatzimanikatis Proceedings of the National Academy of Sciences 118 (8), e2013836118, 2021 | 35 | 2021 |
| Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks S Choudhury, M Moret, P Salvy, D Weilandt, V Hatzimanikatis, L Miskovic Nature Machine Intelligence 4 (8), 710-719, 2022 | 34 | 2022 |
| Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models DR Weilandt, P Salvy, M Masid, G Fengos, R Denhardt-Erikson, ... Bioinformatics 39 (1), btac787, 2023 | 7 | 2023 |
| A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics. Nat Commun 2021 121 12: 1–10 O Oftadeh, P Salvy, M Masid, M Curvat, L Miskovic, V Hatzimanikatis | 6 | 2021 |
| The ETFL formulation allows multi-omics integration in thermodynamicscompliant metabolism and expression models. Nat Commun. 2020; 11: 30 P Salvy, V Hatzimanikatis | 5 | |
| ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints P Salvy, V Hatzimanikatis bioRxiv, 590992, 2019 | 2 | 2019 |
| New and improved methods for integrated models of metabolism and gene expression PGR Salvy EPFL, 2021 | | 2021 |
| ETFL: A Formulation of ME-Models Accounting for Expression and Thermodynamics in Constraint-Based Models PGR Salvy 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018), 2018 | | 2018 |
| Data Repository for Automated Metabolomics Administration (DRAMA) JR Pinto Vieira, PGR Salvy Bioengineering Day 2015, 2015 | | 2015 |
| LCSB S Andreozzi, L Angeles Martinez, P Angelino, M Ataman, Y Berset, ... | | |
