Integrated modeling program, applied chemical theory (IMPACT) JL Banks, HS Beard, Y Cao, AE Cho, W Damm, R Farid, AK Felts, ... Journal of computational chemistry 26 (16), 1752-1780, 2005 | 1431 | 2005 |
Enthalpy− entropy and cavity decomposition of alkane hydration free energies: numerical results and implications for theories of hydrophobic solvation E Gallicchio, MM Kubo, RM Levy The Journal of Physical Chemistry B 104 (26), 6271-6285, 2000 | 420 | 2000 |
AGBNP: An analytic implicit solvent model suitable for molecular dynamics simulations and high‐resolution modeling E Gallicchio, RM Levy Journal of computational chemistry 25 (4), 479-499, 2004 | 403 | 2004 |
On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute− solvent interaction energy RM Levy, LY Zhang, E Gallicchio, AK Felts Journal of the American Chemical Society 125 (31), 9523-9530, 2003 | 334 | 2003 |
Computer simulations with explicit solvent: recent progress in the thermodynamic decomposition of free energies and in modeling electrostatic effects RM Levy, E Gallicchio Annual review of physical chemistry 49 (1), 531-567, 1998 | 330 | 1998 |
The SGB/NP hydration free energy model based on the surface generalized born solvent reaction field and novel nonpolar hydration free energy estimators E Gallicchio, LY Zhang, RM Levy Journal of computational chemistry 23 (5), 517-529, 2002 | 298 | 2002 |
Temperature weighted histogram analysis method, replica exchange, and transition paths E Gallicchio, M Andrec, AK Felts, RM Levy The Journal of Physical Chemistry B 109 (14), 6722-6731, 2005 | 218 | 2005 |
Binding energy distribution analysis method (BEDAM) for estimation of Protein− Ligand binding affinities E Gallicchio, M Lapelosa, RM Levy Journal of Chemical Theory and Computation 6 (9), 2961-2977, 2010 | 176 | 2010 |
Protein folding pathways from replica exchange simulations and a kinetic network model M Andrec, AK Felts, E Gallicchio, RM Levy Proceedings of the National Academy of Sciences 102 (19), 6801-6806, 2005 | 175 | 2005 |
Theory of binless multi-state free energy estimation with applications to protein-ligand binding Z Tan, E Gallicchio, M Lapelosa, RM Levy The Journal of chemical physics 136 (14), 2012 | 171 | 2012 |
Solvent models for protein–ligand binding: Comparison of implicit solvent Poisson and surface generalized Born models with explicit solvent simulations LY Zhang, E Gallicchio, RA Friesner, RM Levy Journal of Computational Chemistry 22 (6), 591-607, 2001 | 168 | 2001 |
Free energy surfaces of β‐hairpin and α‐helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model AK Felts, Y Harano, E Gallicchio, RM Levy Proteins: Structure, Function, and Bioinformatics 56 (2), 310-321, 2004 | 167 | 2004 |
Entropy-enthalpy compensation in solvation and ligand binding revisited E Gallicchio, MM Kubo, RM Levy changes 5 (6), 13-15, 1998 | 166 | 1998 |
The AGBNP2 implicit solvation model E Gallicchio, K Paris, RM Levy Journal of chemical theory and computation 5 (9), 2544-2564, 2009 | 144 | 2009 |
Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the opls all‐atom force field and the surface generalized Born … AK Felts, E Gallicchio, A Wallqvist, RM Levy Proteins: Structure, Function, and Bioinformatics 48 (2), 404-422, 2002 | 141 | 2002 |
Recent theoretical and computational advances for modeling protein–ligand binding affinities E Gallicchio, RM Levy Advances in protein chemistry and structural biology 85, 27-80, 2011 | 131 | 2011 |
Simulating replica exchange simulations of protein folding with a kinetic network model W Zheng, M Andrec, E Gallicchio, RM Levy Proceedings of the National Academy of Sciences 104 (39), 15340-15345, 2007 | 124 | 2007 |
A model for studying drying at hydrophobic interfaces: Structural and thermodynamic properties A Wallqvist, E Gallicchio, RM Levy The Journal of Physical Chemistry B 105 (28), 6745-6753, 2001 | 118 | 2001 |
Advances in all atom sampling methods for modeling protein–ligand binding affinities E Gallicchio, RM Levy Current Opinion in Structural Biology 21 (2), 161-166, 2011 | 109 | 2011 |
Large scale affinity calculations of cyclodextrin host–guest complexes: Understanding the role of reorganization in the molecular recognition process L Wickstrom, P He, E Gallicchio, RM Levy Journal of chemical theory and computation 9 (7), 3136-3150, 2013 | 94 | 2013 |