Phylogenomics with paralogs M Hellmuth, N Wieseke, M Lechner, HP Lenhof, M Middendorf, PF Stadler Proceedings of the National Academy of Sciences 112 (7), 2058-2063, 2015 | 117 | 2015 |
Orthology relations, symbolic ultrametrics, and cographs M Hellmuth, M Hernandez-Rosales, KT Huber, V Moulton, PF Stadler, ... Journal of mathematical biology 66, 399-420, 2013 | 104 | 2013 |
From event-labeled gene trees to species trees M Hernandez-Rosales, M Hellmuth, N Wieseke, KT Huber, V Moulton, ... BMC bioinformatics 13, 1-11, 2012 | 60 | 2012 |
The mathematics of xenology: Di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations M Hellmuth, PF Stadler, N Wieseke Journal of Mathematical Biology 75, 199-237, 2017 | 51 | 2017 |
On the performance of de novo pathway enrichment R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ... NPJ systems biology and applications 3 (1), 6, 2017 | 45 | 2017 |
Reconstructing gene trees from Fitch’s xenology relation M Geiß, J Anders, PF Stadler, N Wieseke, M Hellmuth Journal of mathematical biology 77, 1459-1491, 2018 | 42 | 2018 |
From sequence data including orthologs, paralogs, and xenologs to gene and species trees M Hellmuth, N Wieseke Evolutionary biology: convergent evolution, evolution of complex traits …, 2016 | 39 | 2016 |
Biologically feasible gene trees, reconciliation maps and informative triples M Hellmuth Algorithms for Molecular Biology 12, 1-16, 2017 | 36 | 2017 |
Best match graphs M Geiß, E Chávez, M González Laffitte, A López Sánchez, BMR Stadler, ... Journal of mathematical biology 78, 2015-2057, 2019 | 33 | 2019 |
A survey on hypergraph products M Hellmuth, L Ostermeier, PF Stadler Mathematics in Computer Science 6 (1), 1-32, 2012 | 31 | 2012 |
Best match graphs and reconciliation of gene trees with species trees M Geiß, MEG Laffitte, AL Sánchez, DI Valdivia, M Hellmuth, MH Rosales, ... Journal of mathematical biology 80 (5), 1459-1495, 2020 | 27 | 2020 |
Time-consistent reconciliation maps and forbidden time travel N Nøjgaard, M Geiß, D Merkle, PF Stadler, N Wieseke, M Hellmuth Algorithms for Molecular Biology 13, 1-17, 2018 | 27* | 2018 |
On symbolic ultrametrics, cotree representations, and cograph edge decompositions and partitions M Hellmuth, N Wieseke International Computing and Combinatorics Conference, 609-623, 2015 | 27 | 2015 |
Reciprocal best match graphs M Geiß, PF Stadler, M Hellmuth Journal of mathematical biology 80 (3), 865-953, 2020 | 24 | 2020 |
On tree representations of relations and graphs: Symbolic ultrametrics and cograph edge decompositions M Hellmuth, N Wieseke Journal of Combinatorial Optimization 36 (2), 591-616, 2018 | 24 | 2018 |
Approximate graph products M Hellmuth, W Imrich, W Klöckl, PF Stadler European Journal of Combinatorics 30 (5), 1119-1133, 2009 | 24 | 2009 |
Alternative characterizations of Fitch’s xenology relation M Hellmuth, CR Seemann Journal of mathematical biology 79 (3), 969-986, 2019 | 23 | 2019 |
Visualization of graph products S Jänicke, C Heine, M Hellmuth, PF Stadler, G Scheuermann IEEE Transactions on Visualization and Computer Graphics 16 (6), 1082-1089, 2010 | 21 | 2010 |
From pairs of most similar sequences to phylogenetic best matches PF Stadler, M Geiß, D Schaller, A López Sánchez, M González Laffitte, ... Algorithms for Molecular Biology 15, 1-20, 2020 | 20* | 2020 |
Complete characterization of incorrect orthology assignments in best match graphs D Schaller, M Geiß, PF Stadler, M Hellmuth Journal of mathematical biology 82 (3), 20, 2021 | 19 | 2021 |