| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16838 | 2012 |
| Ensembl 2014 P Flicek, MR Amode, D Barrell, K Beal, K Billis, S Brent, D Carvalho-Silva, ... Nucleic acids research 42 (D1), D749-D755, 2014 | 5360* | 2014 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5261 | 2012 |
| Ensembl 2018 DR Zerbino, P Achuthan, W Akanni, MR Amode, D Barrell, J Bhai, K Billis, ... Nucleic acids research 46 (D1), D754-D761, 2018 | 3065 | 2018 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 2687 | 2019 |
| Ensembl 2015 F Cunningham, MR Amode, D Barrell, K Beal, K Billis, S Brent, ... Nucleic acids research 43 (D1), D662-D669, 2015 | 1683 | 2015 |
| Ensembl 2016 A Yates, W Akanni, MR Amode, D Barrell, K Billis, D Carvalho-Silva, ... Nucleic acids research 44 (D1), D710-D716, 2016 | 1646 | 2016 |
| Ensembl 2007 TJP Hubbard, BL Aken, K Beal, B Ballester, M Cáccamo, Y Chen, ... Nucleic acids research 35 (suppl_1), D610-D617, 2007 | 1558 | 2007 |
| Analyses of pig genomes provide insight into porcine demography and evolution MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ... Nature 491 (7424), 393-398, 2012 | 1494 | 2012 |
| The Ensembl gene annotation system BL Aken, S Ayling, D Barrell, L Clarke, V Curwen, S Fairley, ... Database 2016, baw093, 2016 | 1183 | 2016 |
| The genomic substrate for adaptive radiation in African cichlid fish D Brawand, CE Wagner, YI Li, M Malinsky, I Keller, S Fan, O Simakov, ... Nature 513 (7518), 375-381, 2014 | 1025 | 2014 |
| Ensembl 2019 F Cunningham, P Achuthan, W Akanni, J Allen, MR Amode, IM Armean, ... Nucleic acids research 47 (D1), D745-D751, 2019 | 987 | 2019 |
| Ensembl 2009 TJP Hubbard, BL Aken, S Ayling, B Ballester, K Beal, E Bragin, S Brent, ... Nucleic acids research 37 (suppl_1), D690-D697, 2009 | 953 | 2009 |
| The genome sequence of Atlantic cod reveals a unique immune system B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ... Nature 477 (7363), 207-210, 2011 | 840 | 2011 |
| Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 784 | 2007 |
| The African coelacanth genome provides insights into tetrapod evolution CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ... Nature 496 (7445), 311-316, 2013 | 752 | 2013 |
| Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution JJ Smith, S Kuraku, C Holt, T Sauka-Spengler, N Jiang, MS Campbell, ... Nature genetics 45 (4), 415-421, 2013 | 699 | 2013 |
| The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes KD Pruitt, J Harrow, RA Harte, C Wallin, M Diekhans, DR Maglott, ... Genome research 19 (7), 1316-1323, 2009 | 637 | 2009 |
| Ensembl 2017 BL Aken, P Achuthan, W Akanni, MR Amode, F Bernsdorff, J Bhai, K Billis, ... Nucleic acids research 45 (D1), D635-D642, 2017 | 625 | 2017 |
| The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ... Nature genetics 48 (4), 427-437, 2016 | 575 | 2016 |
