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Application of machine learning techniques to tuberculosis drug resistance analysis. CDW Kouchaki S, Yang Y, Walker TM, Sarah Walker A, Wilson D, Peto TEA Bioinformatics 35 (13), 2276-2282, 2019 | 82 | 2019 |
Validating a 14-drug microtiter plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis PMV Rancoita, F Cugnata, AL Gibertoni Cruz, E Borroni, SJ Hoosdally, ... Antimicrobial agents and chemotherapy 62 (9), 10.1128/aac. 00344-18, 2018 | 80 | 2018 |
A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics CRyPTIC Consortium PLoS biology 20 (8), e3001721, 2022 | 61 | 2022 |
Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis CRyPTIC Consortium European Respiratory Journal 60 (4), 2022 | 51 | 2022 |
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis Y Yang, TM Walker, AS Walker, DJ Wilson, TEA Peto, DW Crook, ... Bioinformatics 35 (18), 3240-3249, 2019 | 50 | 2019 |
Influence of Stress and Antibiotic Resistance on Cell-Length Distribution in Mycobacterium tuberculosis Clinical Isolates S Vijay, DN Vinh, HT Hai, VTN Ha, VTM Dung, TD Dinh, HN Nhung, ... Frontiers in microbiology 8, 2296, 2017 | 45 | 2017 |
Ultrastructural Analysis of Cell Envelope and Accumulation of Lipid Inclusions in Clinical Mycobacterium tuberculosis Isolates from Sputum, Oxidative Stress, and … S Vijay, HT Hai, DDA Thu, E Johnson, A Pielach, NH Phu, GE Thwaites, ... Frontiers in Microbiology 8, 2681, 2018 | 43 | 2018 |
Mycobacterial cultures contain cell size and density specific sub-populations of cells with significant differential susceptibility to antibiotics, oxidative and nitrite stress S Vijay, RR Nair, D Sharan, K Jakkala, N Mukkayyan, S Swaminath, ... Frontiers in Microbiology 8, 463, 2017 | 39 | 2017 |
Asymmetric cell division in Mycobacterium tuberculosis and its unique features S Vijay, M Nagaraja, J Sebastian, P Ajitkumar Archives of microbiology 196, 157-168, 2014 | 39 | 2014 |
Virulence of Mycobacterium tuberculosis Clinical Isolates Is Associated With Sputum Pre-treatment Bacterial Load, Lineage, Survival in Macrophages, and … TTB Tram, HN Nhung, S Vijay, HT Hai, DDA Thu, VTN Ha, TD Dinh, ... Frontiers in cellular and infection microbiology 8, 417, 2018 | 37 | 2018 |
GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes DJ Wilson Molecular biology and evolution 37 (8), 2450-2460, 2020 | 31 | 2020 |
Unveiling unusual features of formation of septal partition and constriction in mycobacteria—an ultrastructural study S Vijay, D Anand, P Ajitkumar Journal of bacteriology 194 (3), 702-707, 2012 | 30 | 2012 |
Highly deviated asymmetric division in very low proportion of mycobacterial mid-log phase cells S Vijay, N Mukkayyan, P Ajitkumar The Open Microbiology Journal 8, 40, 2014 | 29 | 2014 |
Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene … CRyPTIC Consortium, JJ Carter bioRxiv, 2021.09. 14.460353, 2021 | 22* | 2021 |
Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis L Sonnenkalb, JJ Carter, A Spitaleri, Z Iqbal, M Hunt, KM Malone, ... The Lancet Microbe 4 (5), e358-e368, 2023 | 21 | 2023 |
Deciphering bedaquiline and clofazimine resistance in tuberculosis: an evolutionary medicine approach L Sonnenkalb, J Carter, A Spitaleri, Z Iqbal, M Hunt, K Malone, C Utpatel, ... Biorxiv, 2021.03. 19.436148, 2021 | 20 | 2021 |
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes M Hunt, B Letcher, KM Malone, G Nguyen, MB Hall, RM Colquhoun, ... Genome Biology 23 (1), 147, 2022 | 19 | 2022 |
Sources of multidrug resistance in patients with previous isoniazid-resistant tuberculosis identified using whole genome sequencing: A longitudinal cohort study V Srinivasan, VTN Ha, DN Vinh, PVK Thai, DTM Ha, NH Lan, HT Hai, ... Clinical Infectious Diseases 71 (10), e532-e539, 2020 | 18 | 2020 |
A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth … PW Fowler, C Wright, H Spiers, T Zhu, EML Baeten, SW Hoosdally, ... Elife 11, e75046, 2022 | 12 | 2022 |