Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis A Para, Y Li, A Marshall-Colón, K Varala, NJ Francoeur, TM Moran, ... Proceedings of the National Academy of Sciences 111 (28), 10371-10376, 2014 | 171 | 2014 |
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants Y Li, I Mukherjee, KE Thum, M Tanurdzic, MS Katari, M Obertello, ... Genome biology 16 (1), 1-15, 2015 | 110 | 2015 |
The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements Y Li, K Varala, SP Moose, ME Hudson PloS one 7 (10), e47043, 2012 | 54 | 2012 |
Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships CY Cheng, Y Li, K Varala, J Bubert, J Huang, GJ Kim, J Halim, J Arp, ... Nature communications 12 (1), 1-15, 2021 | 52 | 2021 |
Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants Y Li, G Krouk, GM Coruzzi, S Ruffel Journal of experimental botany 65 (19), 5601-5610, 2014 | 41 | 2014 |
Arabidopsis SDG8 potentiates the sustainable transcriptional induction of the pathogenesis-related genes PR1 and PR2 during plant defense response X Zhang, R Ménard, Y Li, GM Coruzzi, T Heitz, WH Shen, A Berr Frontiers in plant science 11, 277, 2020 | 38 | 2020 |
Rapid genotyping of soybean cultivars using high throughput sequencing K Varala, K Swaminathan, Y Li, ME Hudson PloS one 6 (9), e24811, 2011 | 36 | 2011 |
From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks Y Li, K Varala, GM Coruzzi Trends in Genetics 31 (9), 509-515, 2015 | 35 | 2015 |
“Hit‐and‐Run” leaves its mark: Catalyst transcription factors and chromatin modification K Varala, Y Li, A Marshall‐Colón, A Para, GM Coruzzi BioEssays 37 (8), 851-856, 2015 | 29 | 2015 |
SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling Y Li, M Brooks, J Yeoh-Wang, RM McCoy, TM Rock, A Pasquino, CI Moon, ... Plant physiology 182 (1), 215-227, 2020 | 27 | 2020 |
Dynamic histone acetylation in floral volatile synthesis and emission in petunia flowers RM Patrick, XQ Huang, N Dudareva, Y Li Journal of Experimental Botany 72 (10), 3704-3722, 2021 | 25 | 2021 |
Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run J Doidy, Y Li, B Neymotin, MB Edwards, K Varala, D Gresham, ... BMC genomics 17 (1), 1-10, 2016 | 25 | 2016 |
Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings Y Li, K Swaminathan, ME Hudson Plant physiology 156 (4), 2124-2140, 2011 | 22 | 2011 |
Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants Q Li, Y Li, SP Moose, ME Hudson BMC plant biology 15 (1), 1-11, 2015 | 20 | 2015 |
A survey of the small RNA population during far-red light-induced apical hook opening Y Li, K Varala, ME Hudson Frontiers in plant science 5, 156, 2014 | 18 | 2014 |
μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts A Para, Y Li, GM Coruzzi Root Development, 249-261, 2018 | 17 | 2018 |
ODORANT1 targets multiple metabolic networks in petunia flowers MR Boersma, RM Patrick, SL Jillings, NFM Shaipulah, P Sun, MA Haring, ... The Plant Journal, 2021 | 16 | 2021 |
Transcriptome analysis of early stages of sorghum grain mold disease reveals defense regulators and metabolic pathways associated with resistance H Nida, S Lee, Y Li, T Mengiste BMC genomics 22 (1), 1-17, 2021 | 14 | 2021 |
Improved pathogen and stress tolerance in tomato mutants of SET domain histone 3 lysine methyltransferases C Bvindi, S Lee, L Tang, MV Mickelbart, Y Li, T Mengiste New Phytologist, 2022 | 12 | 2022 |
Histone methyltransferases SDG33 and SDG34 regulate organ-specific nitrogen responses in tomato C Bvindi, L Tang, S Lee, R Patrick, Z Yee, T Mengiste, Y Li Frontiers in plant science 13, 2022 | 7 | 2022 |