| The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ... Cell systems 6 (1), 13-24, 2018 | 395 | 2018 |
| Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM ASL Wong, GCG Choi, CH Cui, G Pregernig, P Milani, M Adam, SD Perli, ... Proceedings of the National Academy of Sciences 113 (9), 2544-2549, 2016 | 259 | 2016 |
| Developmental alterations in Huntington's disease neural cells and pharmacological rescue in cells and mice NATURE NEUROSCIENCE 20, 648–660 (2017), 2017 | 190* | 2017 |
| Revealing disease-associated pathways by network integration of untargeted metabolomics L Pirhaji, P Milani, M Leidl, T Curran, J Avila-Pacheco, CB Clish, FM White, ... Nature methods 13 (9), 770-776, 2016 | 175 | 2016 |
| SOD1 transcriptional and posttranscriptional regulation and its potential implications in ALS P Milani, S Gagliardi, E Cova, C Cereda Neurology research international 2011 (1), 458427, 2011 | 171 | 2011 |
| SOD1 and DJ‐1 converge at Nrf2 pathway: a clue for antioxidant therapeutic potential in neurodegeneration P Milani, G Ambrosi, O Gammoh, F Blandini, C Cereda Oxidative medicine and cellular longevity 2013 (1), 836760, 2013 | 135 | 2013 |
| Elucidating MicroRNA regulatory networks using transcriptional, post-transcriptional, and histone modification measurements SJC Gosline, AM Gurtan, CK JnBaptiste, A Bosson, P Milani, S Dalin, ... Cell reports 14 (2), 310-319, 2016 | 102 | 2016 |
| Ubiquilin 2 mutations in Italian patients with amyotrophic lateral sclerosis and frontotemporal dementia C Gellera, C Tiloca, R Del Bo, L Corrado, V Pensato, J Agostini, C Cereda, ... Journal of Neurology, Neurosurgery & Psychiatry 84 (2), 183-187, 2013 | 96 | 2013 |
| Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells EF Pamela Milani, Renan Escalante-Chong, Brandon C. Shelley, Natasha L ... Scientific Reports 6, 2016 | 56 | 2016 |
| Posttranscriptional regulation of SOD1 gene expression under oxidative stress: Potential role of ELAV proteins in sporadic ALS P Milani, M Amadio, U Laforenza, M Dell'Orco, L Diamanti, V Sardone, ... Neurobiology of disease 60, 51-60, 2013 | 53 | 2013 |
| Altered intracellular localization of SOD1 in leukocytes from patients with sporadic amyotrophic lateral sclerosis C Cereda, E Leoni, P Milani, O Pansarasa, G Mazzini, S Guareschi, ... PLoS One 8 (10), e75916, 2013 | 44 | 2013 |
| Hydrogen peroxide-mediated induction of SOD1 gene transcription is independent from Nrf2 in a cellular model of neurodegeneration M Dell'Orco, P Milani, L Arrigoni, O Pansarasa, V Sardone, E Maffioli, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (2), 315-323, 2016 | 39 | 2016 |
| Prediction of immunotherapy response in melanoma through combined modeling of neoantigen burden and immune-related resistance mechanisms CW Abbott, SM Boyle, RM Pyke, LD McDaniel, E Levy, FCP Navarro, ... Clinical Cancer Research 27 (15), 4265-4276, 2021 | 36 | 2021 |
| Network modeling identifies patient-specific pathways in glioblastoma N Tuncbag, P Milani, JL Pokorny, H Johnson, TT Sio, S Dalin, ... Scientific reports 6 (1), 28668, 2016 | 36 | 2016 |
| Analysis of hnRNPA1, A2/B1, and A3 genes in patients with amyotrophic lateral sclerosis D Calini, L Corrado, R Del Bo, S Gagliardi, V Pensato, F Verde, S Corti, ... Neurobiology of aging 34 (11), 2695. e11-2695. e12, 2013 | 36 | 2013 |
| A multi-omics interpretable machine learning model reveals modes of action of small molecules NL Patel-Murray, M Adam, N Huynh, BT Wassie, P Milani, E Fraenkel Scientific reports 10 (1), 954, 2020 | 34 | 2020 |
| Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements L Pirhaji, P Milani, S Dalin, BT Wassie, DE Dunn, RJ Fenster, ... Nature communications 8 (1), 623, 2017 | 30 | 2017 |
| An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients H Phatnani, J Kwan, D Sareen, JR Broach, Z Simmons, X Arcila-Londono, ... Iscience 24 (11), 2021 | 27 | 2021 |
| Lack of association of PON polymorphisms with sporadic ALS in an Italian population C Ricci, S Battistini, L Cozzi, M Benigni, P Origone, L Verriello, C Lunetta, ... Neurobiology of Aging 32 (3), 552. e7-552. e13, 2011 | 26 | 2011 |
| From transcriptome to noncoding RNAs: implications in ALS mechanism S Gagliardi, P Milani, V Sardone, O Pansarasa, C Cereda Neurology Research International 2012 (1), 278725, 2012 | 21 | 2012 |
