| Reshuffling yeast chromosomes with CRISPR/Cas9 A Fleiss, S O'Donnell, T Fournier, W Lu, N Agier, S Delmas, J Schacherer, ... PLoS Genetics 15 (8), e1008332, 2019 | 54 | 2019 |
| MUM&Co: accurate detection of all SV types through whole-genome alignment S O’Donnell, G Fischer Bioinformatics 36 (10), 3242-3243, 2020 | 50 | 2020 |
| Red to brown: an elevated anthocyanic response in apple drives ethylene to advance maturity and fruit flesh browning RV Espley, D Leif, B Plunkett, T McGhie, R Henry-Kirk, M Hall, ... Frontiers in Plant Science 10, 1248, 2019 | 50 | 2019 |
| The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory R Craig, S Gallaher, S Shu, P Salomé, J Jenkins, C Blaby-Haas, ... The Plant cell 94 (3), 253-265, 2022 | 41 | 2022 |
| Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae S O’Donnell, JX Yue, OA Saada, N Agier, C Caradec, T Cokelaer, ... Nature Genetics 55 (8), 1390-1399, 2023 | 36 | 2023 |
| Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates W Mardones, CA Villarroel, K Krogerus, SM Tapia, K Urbina, CI Oporto, ... Microbial Biotechnology 13 (4), 1012-1025, 2020 | 23 | 2020 |
| Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690 S O’Donnell, F Chaux, G Fischer Microbiology Resource Announcements 9 (37), 2020 | 22 | 2020 |
| Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii F Chaux-Jukic, S O’Donnell, RJ Craig, S Eberhard, O Vallon, Z Xu Nucleic Acids Research 49 (13), 7571-7587, 2021 | 13 | 2021 |
| Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L. cidri P Villarreal, CA Villarroel, S O'Donnell, N Agier, JF Quintero‐Galvis, ... Environmental Microbiology 24 (12), 5615-5629, 2022 | 5 | 2022 |
| Domestication in dry‐cured meat Penicillium fungi: Convergent specific phenotypes and horizontal gene transfers without strong genetic subdivision Y Lo, J Bruxaux, RC Rodríguez de la Vega, S O'Donnell, A Snirc, M Coton, ... Evolutionary Applications 16 (9), 1637-1660, 2023 | 4 | 2023 |
| Domestication of different varieties in the cheese-making fungus Geotrichum candidum B Bennetot, JP Vernadet, V Perkins, S Hautefeuille, ... Peer Community Journal 3, 2023 | 4 | 2023 |
| Domestication signatures in the non-conventional yeast Lachancea cidri P Villarreal, S O'Donnell, N Agier, F Muñoz-Guzman, J Benavides-Parra, ... Msystems 9 (1), e01058-23, 2024 | 2 | 2024 |
| Harbouring Starships: the accumulation of large horizontal gene transfers in domesticated and pathogenic fungi S O'Donnell, G Rezende, JP Vernadet, A Snirc, J Ropars bioRxiv, 2024.07. 03.601904, 2024 | | 2024 |
| Tools for short variant calling and the way to deal with big datasets A Le Meur, R Zein-Eddine, O Lamer, F Hak, G Senelle, JP Vernadet, ... Phylogenomics, 219-250, 2024 | | 2024 |
| A transient burst of mutations occurs during the normal development of yeast colonies N Agier, N Vittorelli, F Chaux, A Gillet-Markowska, S O’Donnell, G Fischer, ... bioRxiv, 2023.12. 11.571082, 2023 | | 2023 |
| Horizontal transfers between fungal Fusarium species contributed to successive outbreaks of coffee wilt disease LD Peck, T Llewellyn, B Bennetot, S O'Donnell, RW Nowell, MJ Ryan, ... bioRxiv, 2023.12. 22.572981, 2023 | | 2023 |
| Catologuing structural variations at the population level in Saccharomyces cerevisiae by generating a Reference genome Assembly Panel S O'Donnell | | 2020 |
| Transcriptional Regulation of the Phenylpropanoid Pathway in Malus x domestica S O'Donnell Masters Thesis-University of Auckland, 2016 | | 2016 |
