WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015 | 385* | 2015 |
Networks: expanding evolutionary thinking E Bapteste, L van Iersel, A Janke, S Kelchner, S Kelk, JO McInerney, ... Trends in Genetics 29 (8), 439-441, 2013 | 195 | 2013 |
Ancient Dispersal of the Human Fungal Pathogen Cryptococcus gattii from the Amazon Rainforest F Hagen, PC Ceresini, I Polacheck, H Ma, F Nieuwerburgh, T Gabaldón, ... PloS one 8 (8), e71148, 2013 | 161 | 2013 |
The complexity of the single individual SNP haplotyping problem R Cilibrasi, L Van Iersel, S Kelk, J Tromp Algorithmica 49, 13-36, 2007 | 158* | 2007 |
Geographically structured populations of Cryptococcus neoformans variety grubii in Asia correlate with HIV status and show a clonal population structure K Khayhan, F Hagen, W Pan, S Simwami, MC Fisher, R Wahyuningsih, ... PLoS One 8 (9), e72222, 2013 | 108 | 2013 |
Constructing level-2 phylogenetic networks from triplets L Van Iersel, J Keijsper, S Kelk, L Stougie, F Hagen, T Boekhout Annual International Conference on Research in Computational Molecular …, 2008 | 97 | 2008 |
Locating a tree in a phylogenetic network L Van Iersel, C Semple, M Steel Information Processing Letters 110 (23), 1037-1043, 2010 | 87 | 2010 |
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters L Van Iersel, S Kelk, R Rupp, D Huson Bioinformatics 26 (12), i124-i131, 2010 | 76 | 2010 |
Constructing the simplest possible phylogenetic network from triplets L van Iersel, S Kelk Algorithmica 60 (2), 207-235, 2011 | 64 | 2011 |
Every ternary permutation constraint satisfaction problem parameterized above average has a kernel with a quadratic number of variables G Gutin, L van Iersel, M Mnich, A Yeo Journal of Computer and System Sciences, 2011 | 58 | 2011 |
Nonbinary tree-based phylogenetic networks L Jetten, L van Iersel IEEE/ACM transactions on computational biology and bioinformatics 15 (1 …, 2016 | 52 | 2016 |
Trinets encode tree-child and level-2 phylogenetic networks L Van Iersel, V Moulton Journal of mathematical biology 68 (7), 1707-1729, 2014 | 49 | 2014 |
Uniqueness, intractability and exact algorithms: reflections on level-k phylogenetic networks L Van Iersel, S Kelk, M Mnich Journal of Bioinformatics and Computational Biology 7 (04), 597-623, 2009 | 43 | 2009 |
How much information is needed to infer reticulate evolutionary histories? KT Huber, L Van Iersel, V Moulton, T Wu Systematic Biology 64 (1), 102-111, 2015 | 35 | 2015 |
A practical algorithm for reconstructing level-1 phylogenetic networks KT Huber, L Van Iersel, S Kelk, R Suchecki IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (3), 635-649, 2010 | 35 | 2010 |
When two trees go to war L van Iersel, S Kelk Journal of Theoretical Biology, 2010 | 34 | 2010 |
On computing the maximum parsimony score of a phylogenetic network M Fischer, L Van Iersel, S Kelk, C Scornavacca SIAM Journal on Discrete Mathematics 29 (1), 559-585, 2015 | 32 | 2015 |
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets KT Huber, L Van Iersel, V Moulton, C Scornavacca, T Wu Algorithmica 77, 173-200, 2017 | 31 | 2017 |
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set S Kelk, L Van Iersel, N Lekic, S Linz, C Scornavacca, L Stougie SIAM journal on discrete mathematics 26 (4), 1635-1656, 2012 | 28 | 2012 |
On unrooted and root-uncertain variants of several well-known phylogenetic network problems L Van Iersel, S Kelk, G Stamoulis, L Stougie, O Boes Algorithmica 80, 2993-3022, 2018 | 26 | 2018 |