| Combinatorial bZIP dimers display complex DNA-binding specificity landscapes JA Rodríguez-Martínez, AW Reinke, D Bhimsaria, AE Keating, AZ Ansari elife 6, e19272, 2017 | 150 | 2017 |
| Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity ZT Campbell, D Bhimsaria, CT Valley, JA Rodriguez-Martinez, ... Cell reports 1 (5), 570-581, 2012 | 141 | 2012 |
| Specificity landscapes of DNA binding molecules elucidate biological function CD Carlson, CL Warren, KE Hauschild, MS Ozers, N Qadir, D Bhimsaria, ... Proceedings of the National Academy of Sciences 107 (10), 4544-4549, 2010 | 111 | 2010 |
| Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach P Meyer, T Cokelaer, D Chandran, KH Kim, PR Loh, G Tucker, M Lipson, ... BMC systems biology 8, 1-18, 2014 | 81 | 2014 |
| Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif VR Yella, D Bhimsaria, D Ghoshdastidar, JA Rodríguez-Martínez, ... Nucleic acids research 46 (22), 11883-11897, 2018 | 73 | 2018 |
| De novo design of programmable inducible promoters X Liu, STP Gupta, D Bhimsaria, JL Reed, JA Rodríguez-Martínez, ... Nucleic Acids Research 47 (19), 10452-10463, 2019 | 47 | 2019 |
| Mapping polyamide–DNA interactions in human cells reveals a new design strategy for effective targeting of genomic sites GS Erwin, D Bhimsaria, A Eguchi, AZ Ansari Angewandte Chemie 126 (38), 10288-10292, 2014 | 41 | 2014 |
| Reprogramming cell fate with a genome-scale library of artificial transcription factors A Eguchi, MJ Wleklinski, MC Spurgat, EA Heiderscheit, AS Kropornicka, ... Proceedings of the National Academy of Sciences 113 (51), E8257-E8266, 2016 | 36 | 2016 |
| Sequence-specificity and energy landscapes of DNA-binding molecules JR Tietjen, LJ Donato, D Bhimisaria, AZ Ansari Methods in enzymology 497, 3-30, 2011 | 27 | 2011 |
| Synthetic genome readers target clustered binding sites across diverse chromatin states GS Erwin, MP Grieshop, D Bhimsaria, TJ Do, JA Rodríguez-Martínez, ... Proceedings of the National Academy of Sciences 113 (47), E7418-E7427, 2016 | 20 | 2016 |
| Specificity landscapes unmask submaximal binding site preferences of transcription factors D Bhimsaria, JA Rodríguez-Martínez, J Pan, D Roston, EN Korkmaz, ... Proceedings of the National Academy of Sciences 115 (45), E10586-E10595, 2018 | 18 | 2018 |
| Single position substitution of hairpin pyrrole-imidazole polyamides imparts distinct DNA-binding profiles across the human genome PB Finn, D Bhimsaria, A Ali, A Eguchi, AZ Ansari, PB Dervan Plos one 15 (12), e0243905, 2020 | 9 | 2020 |
| Genome-wide mapping of drug-DNA interactions in cells with COSMIC (Crosslinking of Small Molecules to Isolate Chromatin) GS Erwin, MP Grieshop, D Bhimsaria, A Eguchi, JA Rodríguez-Martínez, ... JoVE (Journal of Visualized Experiments), e53510, 2016 | 7 | 2016 |
| Hidden modes of DNA binding by human nuclear receptors D Bhimsaria, JA Rodríguez-Martínez, JL Mendez-Johnson, ... Nature Communications 14 (1), 4179, 2023 | 6 | 2023 |
| Targeting an evolutionarily conserved “ELL” motif in spike protein to identify a small molecule fusion inhibitor against SARS-CoV-2 ID Jana, P Bhattacharya, K Mayilsamy, S Banerjee, G Bhattacharje, S Das, ... PNAS nexus 1 (5), pgac198, 2022 | 6 | 2022 |
| Application of neural network with error correlation and time evolution for retrieval of soil moisture and other vegetation variables D Singh, V Srivastava, B Pandey, D Bhimsaria Progress In Electromagnetics Research B 15, 245-465, 2009 | 6 | 2009 |
| ZFTA fusion oncoproteins drive tumorigenesis through transcriptional condensates A Arabzade, H Shirnekhi, S Varadharajan, S Ippagunta, N Laboe, D Gee, ... | | 2024 |
| Targeting an evolutionarily conserved “ELL” motif in the spike protein to develop a small molecule fusion inhibitor against SARS-CoV-2 I Das Jana, P Bhattacharya, K Mayilsamy, S Banerjee, G Bhattacharje, ... bioRxiv, 2022.03. 16.484554, 2022 | | 2022 |
| Computational Methods for Detailing DNA Binding Affinities and Differences Among Related Proteins D Bhimsaria The University of Wisconsin-Madison, 2016 | | 2016 |
| Thermal Feasibility Analysis of Periodic Real-Time Tasks with Jitter D Bhimsaria | | 2014 |
Jose A. Rodriguez-MartinezUniversity of Puerto Rico Rio Piedras在 upr.edu 的电子邮件经过验证
