| The large-scale organization of the bacterial network of ecological co-occurrence interactions S Freilich, A Kreimer, I Meilijson, U Gophna, R Sharan, E Ruppin Nucleic acids research 38 (12), 3857-3868, 2010 | 312 | 2010 |
| The evolution of modularity in bacterial metabolic networks A Kreimer, E Borenstein, U Gophna, E Ruppin Proceedings of the National Academy of Sciences 105 (19), 6976-6981, 2008 | 219 | 2008 |
| Single-cell epigenomics reveals mechanisms of human cortical development RS Ziffra, CN Kim, JM Ross, A Wilfert, TN Turner, M Haeussler, ... Nature 598 (7879), 205-213, 2021 | 213 | 2021 |
| Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation AH Ryu, WL Eckalbar, A Kreimer, N Yosef, N Ahituv Scientific Reports 7, Article number: 7533, 2017 | 153 | 2017 |
| Metabolic-network-driven analysis of bacterial ecological strategies S Freilich, A Kreimer, E Borenstein, N Yosef, R Sharan, U Gophna, ... Genome biology 10, 1-8, 2009 | 116 | 2009 |
| Impact of pre-adapted HIV transmission Nature medicine 22 (6), 606-613, 2016 | 111* | 2016 |
| Identification and massively parallel characterization of regulatory elements driving neural induction F Inoue, A Kreimer, T Ashuach, N Ahituv, N Yosef Cell stem cell 25 (5), 713-727. e10, 2019 | 107 | 2019 |
| lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements MG Gordon, F Inoue, B Martin, M Schubach, V Agarwal, S Whalen, ... Nature protocols 15 (8), 2387-2412, 2020 | 105 | 2020 |
| NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation R Levy, R Carr, A Kreimer, S Freilich, E Borenstein BMC bioinformatics 16, 1-6, 2015 | 102 | 2015 |
| MPRAnalyze: statistical framework for massively parallel reporter assays T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef Genome Biology 20 (183), 2019 | 81 | 2019 |
| Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ... Human mutation 40 (9), 1280-1291, 2019 | 55 | 2019 |
| Predicting gene expression in massively parallel reporter assays: A comparative study A Kreimer, H Zeng, MD Edwards, Y Guo, K Tian, S Shin, R Welch, ... Human mutation 38 (9), 1240-1250, 2017 | 55 | 2017 |
| NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species A Kreimer, A Doron-Faigenboim, E Borenstein, S Freilich Bioinformatics 28 (16), 2195-2197, 2012 | 55 | 2012 |
| Decoupling environment-dependent and independent genetic robustness across bacterial species S Freilich, A Kreimer, E Borenstein, U Gophna, R Sharan, E Ruppin PLoS computational biology 6 (2), e1000690, 2010 | 42 | 2010 |
| Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation A Kreimer, T Ashuach, F Inoue, A Khodaverdian, C Deng, N Yosef, ... Nature communications 13 (1), 1504, 2022 | 32 | 2022 |
| Single cell epigenomic atlas of the developing human brain and organoids RS Ziffra, CN Kim, A Wilfert, TN Turner, M Haeussler, AM Casella, ... BioRxiv, 2019.12. 30.891549, 2019 | 32 | 2019 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome biology 25 (1), 53, 2024 | 25 | 2024 |
| Meta‐analysis of massively parallel reporter assays enables prediction of regulatory function across cell types A Kreimer, Z Yan, N Ahituv, N Yosef Human mutation 40 (9), 1299-1313, 2019 | 21 | 2019 |
| Variants in exons and in transcription factors affect gene expression in trans A Kreimer, I Pe'er Genome biology 14, 1-13, 2013 | 17 | 2013 |
| Inference of modules associated to eQTLs A Kreimer, O Litvin, K Hao, C Molony, D Pe’er, I Pe'er Nucleic acids research 40 (13), e98-e98, 2012 | 17 | 2012 |
Nadav AhituvUCSF在 ucsf.edu 的电子邮件经过验证
