| Concepts in Boolean network modeling: What do they all mean? JD Schwab, SD Kühlwein, N Ikonomi, M Kühl, HA Kestler Computational and structural biotechnology journal 18, 571-582, 2020 | 175 | 2020 |
| Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells JD Schwab, N Ikonomi, SD Werle, FM Weidner, H Geiger, HA Kestler Computational and structural biotechnology journal 19, 5321-5332, 2021 | 32 | 2021 |
| Awakening the HSC: dynamic modeling of HSC maintenance unravels regulation of the TP53 pathway and quiescence N Ikonomi, SD Kühlwein, JD Schwab, HA Kestler Frontiers in Physiology 11, 557667, 2020 | 21 | 2020 |
| Interaction empowerment in mobile health: concepts, challenges, and perspectives M Hamberger, N Ikonomi, JD Schwab, SD Werle, A Fürstberger, ... JMIR mHealth and uHealth 10 (4), e32696, 2022 | 18 | 2022 |
| Unraveling the molecular tumor-promoting regulation of cofilin-1 in pancreatic cancer SD Werle, JD Schwab, M Tatura, S Kirchhoff, R Szekely, R Diels, ... Cancers 13 (4), 725, 2021 | 16 | 2021 |
| Analysis, identification and visualization of subgroups in genomics G Völkel, S Laban, A Fürstberger, SD Kühlwein, N Ikonomi, TK Hoffmann, ... Briefings in Bioinformatics 22 (3), bbaa217, 2021 | 10 | 2021 |
| Capturing dynamic relevance in Boolean networks using graph theoretical measures FM Weidner, JD Schwab, SD Werle, N Ikonomi, L Lausser, HA Kestler Bioinformatics 37 (20), 3530-3537, 2021 | 9 | 2021 |
| Supporting medical staff from psycho-oncology with smart mobile devices: insights into the development process and first results J Schobel, M Volz, K Hörner, P Kuhn, F Jobst, JD Schwab, N Ikonomi, ... International Journal of Environmental Research and Public Health 18 (10), 5092, 2021 | 9 | 2021 |
| Discrete logic modeling of cell signaling pathways N Ikonomi, SD Werle, JD Schwab, HA Kestler TGF-Beta Signaling: Methods and Protocols, 159-181, 2022 | 7 | 2022 |
| Patient empowerment during the COVID-19 pandemic by ensuring safe and fast communication of test results: implementation and performance of a tracking system G Völkel, A Fürstberger, JD Schwab, SD Werle, N Ikonomi, ... Journal of Medical Internet Research 23 (6), e27348, 2021 | 7 | 2021 |
| Leveraging quantum computing for dynamic analyses of logical networks in systems biology FM Weidner, JD Schwab, S Wölk, F Rupprecht, N Ikonomi, SD Werle, ... Patterns 4 (3), 2023 | 6 | 2023 |
| Perspective on mHealth concepts to ensure users’ empowerment–from adverse event tracking for COVID-19 vaccinations to oncological treatment JD Schwab, J Schobel, SD Werle, A Fuerstberger, N Ikonomi, R Szekely, ... IEEE Access 9, 83863-83875, 2021 | 6 | 2021 |
| Digitalization of adverse event management in oncology to improve treatment outcome—A prospective study protocol AMR Kestler, SD Kühlwein, JM Kraus, JD Schwab, R Szekely, P Thiam, ... Plos one 16 (6), e0252493, 2021 | 6 | 2021 |
| Identification of dynamic driver sets controlling phenotypical landscapes SD Werle, N Ikonomi, JD Schwab, JM Kraus, FM Weidner, KL Rudolph, ... Computational and Structural Biotechnology Journal 20, 1603-1617, 2022 | 4 | 2022 |
| AMBAR-interactive alteration annotations for molecular tumor boards A Fürstberger, N Ikonomi, AMR Kestler, R Marienfeld, JD Schwab, P Kuhn, ... Computer Methods and Programs in Biomedicine 240, 107697, 2023 | 3 | 2023 |
| GatekeepR: an R Shiny application for the identification of nodes with high dynamic impact in Boolean networks FM Weidner, N Ikonomi, SD Werle, JD Schwab, HA Kestler Bioinformatics 40 (1), btae007, 2024 | 1 | 2024 |
| Logical modelling of molecular crosstalks for the prediction of complex phenotypes N Ikonomi Universität Ulm, 2023 | 1 | 2023 |
| A systems biology approach to define mechanisms, phenotypes, and drivers in PanNETs with a personalized perspective SD Werle, N Ikonomi, L Lausser, AMTU Kestler, FM Weidner, JD Schwab, ... npj Systems Biology and Applications 9 (1), 22, 2023 | 1 | 2023 |
| CANTATA—prediction of missing links in Boolean networks using genetic programming C Müssel, N Ikonomi, SD Werle, FM Weidner, M Maucher, JD Schwab, ... Bioinformatics 38 (21), 4893-4900, 2022 | 1 | 2022 |
| Response to the letter to the editor: On the feasibility of dynamical analysis of network models of biochemical regulation FM Weidner, JD Schwab, SD Werle, N Ikonomi, L Lausser, HA Kestler Bioinformatics 38 (14), 3676-3676, 2022 | 1 | 2022 |
