| A Candida auris Outbreak and Its Control in an Intensive Care Setting DW Eyre, AE Sheppard, H Madder, I Moir, R Moroney, TP Quan, ... New England Journal of Medicine 379 (14), 1322-1331, 2018 | 428 | 2018 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 324* | 2016 |
| Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC AE Sheppard, N Stoesser, DJ Wilson, R Sebra, A Kasarskis, LW Anson, ... Antimicrobial agents and chemotherapy 60 (6), 3767-3778, 2016 | 287* | 2016 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 248 | 2019 |
| Plasmid classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology A Orlek, N Stoesser, MF Anjum, M Doumith, MJ Ellington, T Peto, D Crook, ... Frontiers in microbiology 8, 182, 2017 | 205 | 2017 |
| Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing AJ Mathers, N Stoesser, AE Sheppard, L Pankhurst, A Giess, AJ Yeh, ... Antimicrobial agents and chemotherapy 59 (3), 1656-1663, 2015 | 154 | 2015 |
| Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community … N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ... Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014 | 147 | 2014 |
| Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae S David, V Cohen, S Reuter, AE Sheppard, T Giani, J Parkhill, ... Proceedings of the National Academy of Sciences 117 (40), 25043-25054, 2020 | 127 | 2020 |
| Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya AC Seale, AC Koech, AE Sheppard, HC Barsosio, J Langat, E Anyango, ... Nature microbiology 1 (7), 1-10, 2016 | 121 | 2016 |
| Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli N Stoesser, AE Sheppard, G Peirano, LW Anson, L Pankhurst, R Sebra, ... Scientific reports 7 (1), 5917, 2017 | 120 | 2017 |
| Severe infections emerge from commensal bacteria by adaptive evolution BC Young, CH Wu, NC Gordon, K Cole, JR Price, E Liu, AE Sheppard, ... elife 6, e30637, 2017 | 115 | 2017 |
| Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly … S George, L Pankhurst, A Hubbard, A Votintseva, N Stoesser, ... Microbial genomics 3 (8), e000118, 2017 | 106 | 2017 |
| Extensive within-host diversity in fecally carried extended-spectrum-beta-lactamase-producing Escherichia coli isolates: implications for transmission analyses N Stoesser, AE Sheppard, CE Moore, T Golubchik, CM Parry, P Nget, ... Journal of clinical microbiology 53 (7), 2122-2131, 2015 | 98* | 2015 |
| The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ... Environmental Microbiome 14 (1), 1-15, 2019 | 89 | 2019 |
| Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids A Orlek, H Phan, AE Sheppard, M Doumith, M Ellington, T Peto, D Crook, ... Plasmid 91, 42-52, 2017 | 89 | 2017 |
| The stealthy superbug: the role of asymptomatic enteric carriage in maintaining a long-term hospital outbreak of ST228 methicillin-resistant Staphylococcus aureus L Senn, O Clerc, G Zanetti, P Basset, G Prod’hom, NC Gordon, ... MBio 7 (1), 10.1128/mbio. 02039-15, 2016 | 89* | 2016 |
| Horizontal transfer of carbapenemase-encoding plasmids and comparison with hospital epidemiology data CA Hardiman, RA Weingarten, S Conlan, P Khil, JP Dekker, AJ Mathers, ... Antimicrobial agents and chemotherapy 60 (8), 4910-4919, 2016 | 84 | 2016 |
| Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes L Masri, A Branca, AE Sheppard, A Papkou, D Laehnemann, ... PLoS biology 13 (6), e1002169, 2015 | 83 | 2015 |
| Instability of plastid DNA in the nuclear genome AE Sheppard, JN Timmis PLoS genetics 5 (1), e1000323, 2009 | 77 | 2009 |
| Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco AE Sheppard, MA Ayliffe, L Blatch, A Day, SK Delaney, N Khairul-Fahmy, ... Plant physiology 148 (1), 328-336, 2008 | 73 | 2008 |
