Glutaminolysis and fumarate accumulation integrate immunometabolic and epigenetic programs in trained immunity RJW Arts, B Novakovic, R Ter Horst, A Carvalho, S Bekkering, ... Cell metabolism 24 (6), 807-819, 2016 | 712 | 2016 |
Genetic drivers of epigenetic and transcriptional variation in human immune cells L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ... Cell 167 (5), 1398-1414. e24, 2016 | 672 | 2016 |
β-Glucan reverses the epigenetic state of LPS-induced immunological tolerance B Novakovic*, E Habibi*, SY Wang*, RJW Arts, R Davar, ... Cell 167 (5), 1354-1368. e14, 2016 | 564 | 2016 |
Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells E Habibi, AB Brinkman, J Arand, LI Kroeze, HHD Kerstens, F Matarese, ... Cell stem cell 13 (3), 360-369, 2013 | 502 | 2013 |
Molecular logic of cellular diversification in the mouse cerebral cortex DJ Di Bella*, E Habibi*, RR Stickels, G Scalia, J Brown, P Yadollahpour, ... Nature, 1-6, 2021 | 255 | 2021 |
Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells F von Meyenn*, M Iurlaro*, E Habibi*, NQ Liu, A Salehzadeh-Yazdi, ... Molecular cell 62 (6), 848-861, 2016 | 251 | 2016 |
Dynamic reorganization of extremely long-range promoter-promoter interactions between two states of pluripotency O Joshi, SY Wang, T Kuznetsova, Y Atlasi, T Peng, PJ Fabre, E Habibi, ... Cell stem cell 17 (6), 748-757, 2015 | 202 | 2015 |
Dynamics of transcription regulation in human bone marrow myeloid differentiation to mature blood neutrophils L Grassi, F Pourfarzad, S Ullrich, A Merkel, F Were, ... Cell reports 24 (10), 2784-2794, 2018 | 118 | 2018 |
Joint single-cell measurements of nuclear proteins and RNA in vivo H Chung, CN Parkhurst, EM Magee, D Phillips, E Habibi, F Chen, ... Nature methods 18 (10), 1204-1212, 2021 | 88 | 2021 |
Emerging roles of epigenetic mechanisms in Parkinson’s disease E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty Functional & integrative genomics 11, 523-537, 2011 | 67 | 2011 |
Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency Y Atlasi, W Megchelenbrink, T Peng, E Habibi, O Joshi, SY Wang, ... Nature cell biology 21 (5), 568-578, 2019 | 60 | 2019 |
Vitamin C and l-proline antagonistic effects capture alternative states in the pluripotency continuum C D'Aniello, E Habibi, F Cermola, D Paris, F Russo, A Fiorenzano, ... Stem Cell Reports 8 (1), 1-10, 2017 | 50 | 2017 |
Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome G Iacono, A Dubos, H Méziane, M Benevento, E Habibi, A Mandoli, F Riet, ... Nucleic Acids Research 46 (10), 4950-4965, 2018 | 44 | 2018 |
Chromatin-based classification of genetically heterogeneous AMLs into two distinct subtypes with diverse stemness phenotypes G Yi, ATJ Wierenga, F Petraglia, P Narang, EM Janssen-Megens, ... Cell reports 26 (4), 1059-1069. e6, 2019 | 40 | 2019 |
Compressed sensing for highly efficient imaging transcriptomics B Cleary, B Simonton, J Bezney, E Murray, S Alam, A Sinha, E Habibi, ... Nature biotechnology 39 (8), 936-942, 2021 | 38 | 2021 |
Simultaneous single cell measurements of intranuclear proteins and gene expression H Chung, CN Parkhurst, EM Magee, D Phillips, E Habibi, F Chen, ... BioRxiv, 2021.01. 18.427139, 2021 | 21 | 2021 |
Urate-induced epigenetic modifications in myeloid cells M Badii, OI Gaal, MC Cleophas, V Klück, R Davar, E Habibi, ST Keating, ... Arthritis Research & Therapy 23, 1-11, 2021 | 20 | 2021 |
Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia AA Singh, F Petraglia, A Nebbioso, G Yi, M Conte, S Valente, A Mandoli, ... Oncotarget 9 (39), 25647, 2018 | 16 | 2018 |
Molecular logic of cellular diversification in the mammalian cerebral cortex DJ Di Bella*, E Habibi*, SM Yang, RR Stickels, J Brown, P Yadollahpour, ... bioRxiv, 2020 | 15 | 2020 |
Transcriptional and epigenetic control in mouse pluripotency: lessons from in vivo and in vitro studies E Habibi, HG Stunnenberg Current Opinion in Genetics & Development 46, 114-122, 2017 | 14 | 2017 |