| An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014 | 2699 | 2014 |
| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1751 | 2014 |
| Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality E Ntini, AI Järvelin, J Bornholdt, Y Chen, M Boyd, M Jørgensen, ... Nature structural & molecular biology 20 (8), 923-928, 2013 | 307 | 2013 |
| Identification of a nuclear exosome decay pathway for processed transcripts N Meola, M Domanski, E Karadoulama, Y Chen, C Gentil, D Pultz, ... Molecular cell 64 (3), 520-533, 2016 | 249 | 2016 |
| Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes S Lykke-Andersen, Y Chen, BR Ardal, B Lilje, J Waage, A Sandelin, ... Genes & development 28 (22), 2498-2517, 2014 | 196 | 2014 |
| Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes E Valen, P Preker, PR Andersen, X Zhao, Y Chen, C Ender, A Dueck, ... Nature structural & molecular biology 18 (9), 1075-1082, 2011 | 132 | 2011 |
| Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites SF Schmidt, M Jørgensen, Y Chen, R Nielsen, A Sandelin, S Mandrup BMC genomics 12, 1-16, 2011 | 113 | 2011 |
| Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies M Boyd, M Thodberg, M Vitezic, J Bornholdt, K Vitting-Seerup, Y Chen, ... Nature communications 9 (1), 1661, 2018 | 97 | 2018 |
| Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters Y Chen, AA Pai, J Herudek, M Lubas, N Meola, AI Järvelin, R Andersson, ... Nature genetics 48 (9), 984-994, 2016 | 82 | 2016 |
| Human gene promoters are intrinsically bidirectional R Andersson, Y Chen, L Core, JT Lis, A Sandelin, TH Jensen Molecular cell 60 (3), 346-347, 2015 | 76 | 2015 |
| The RNA exosome contributes to gene expression regulation during stem cell differentiation M Lloret-Llinares, E Karadoulama, Y Chen, LA Wojenski, GJ Villafano, ... Nucleic Acids Research 46 (21), 11502-11513, 2018 | 48 | 2018 |
| Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data Y Chen, M Jørgensen, R Kolde, X Zhao, B Parker, E Valen, J Wen, ... BMC genomics 12, 1-16, 2011 | 45 | 2011 |
| Comprehensive profiling of the fission yeast transcription start site activity during stress and media response M Thodberg, A Thieffry, J Bornholdt, M Boyd, C Holmberg, A Azad, ... Nucleic acids research 47 (4), 1671-1691, 2019 | 37 | 2019 |
| On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase H Ienasescu, K Li, R Andersson, M Vitezic, S Rennie, Y Chen, ... Database 2016, baw144, 2016 | 26 | 2016 |
| Lactobacillus rhamnosus GG genomic and phenotypic stability in an industrial production process M Stage, A Wichmann, M Jørgensen, NI Vera-Jimenéz, M Wielje, ... Applied and environmental microbiology 86 (6), e02780-19, 2020 | 21 | 2020 |
| Dietary control of skin lipid composition and microbiome KS Moestrup, Y Chen, T Schepeler, PJ Schweiger, KB Jensen Journal of Investigative Dermatology 138 (5), 1225-1228, 2018 | 21 | 2018 |
| Relation between NOD2 genotype and changes in innate signaling in Crohn’s disease on mRNA and miRNA levels Y Chen, M Salem, M Boyd, J Bornholdt, Y Li, M Coskun, JB Seidelin, ... NPJ Genomic Medicine 2 (1), 3, 2017 | 11 | 2017 |
| Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial J Bornholdt, C Broholm, Y Chen, A Rago, S Sloth, J Hendel, C Melsæther, ... Gut Microbes 12 (1), 1854639, 2020 | 7 | 2020 |
| Identification of promoters and enhancers induced by carbon nanotube exposure J Bornholdt, B Lilje, AT Saber, M Boyd, M Jørgensen, Y Chen, M Vitezic, ... First Annual Danish Bioinformatics Conference, 2015 | | 2015 |
