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Samuel Miravet-Verde
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Unraveling the hidden universe of small proteins in bacterial genomes
S Miravet-Verde, et al.
Mol Syst Biol 15, e8290, 2019
1162019
High frequencies of antibiotic resistance genes in infants’ meconium and early fecal samples
MJ Gosalbes, Y Vallès, N Jiménez-Hernández, C Balle, P Riva, ...
Journal of developmental origins of health and disease 7 (1), 35-44, 2016
952016
The role of clonal communication and heterogeneity in breast cancer
A Martín-Pardillos, Á Valls Chiva, G Bande Vargas, P Hurtado Blanco, ...
BMC cancer 19, 1-26, 2019
502019
SynMyco transposon: engineering transposon vectors for efficient transformation of minimal genomes
A Montero-Blay, S Miravet-Verde, M Lluch-Senar, C Piñero-Lambea, ...
DNA Research 26 (4), 327-339, 2019
242019
Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision
L Ciampi, F Mantica, L López-Blanch, J Permanyer, C Rodriguez-Marín, ...
Proceedings of the National Academy of Sciences 119 (29), e2117090119, 2022
232022
FASTQINS and ANUBIS: two bioinformatic tools to explore facts and artifacts in transposon sequencing and essentiality studies
S Miravet-Verde, R Burgos, J Delgado, M Lluch-Senar, L Serrano
Nucleic Acids Research, 2020
202020
Alternative transcriptional regulation in genome-reduced bacteria
S Miravet-Verde, V Lloréns-Rico, L Serrano
Current opinion in microbiology 39, 89-95, 2017
172017
Inferring active metabolic pathways from proteomics and essentiality data
A Montero-Blay, C Piñero-Lambea, S Miravet-Verde, M Lluch-Senar, ...
Cell Reports 31 (9), 2020
152020
A genetic toolkit and gene switches to limit Mycoplasma growth for biosafety applications
A Broto, E Gaspari, S Miravet-Verde, VAPM Dos Santos, M Isalan
Nature Communications 13 (1), 1910, 2022
122022
LoxTnSeq: random transposon insertions combined with cre/lox recombination and counterselection to generate large random genome reductions
D Shaw, S Miravet‐Verde, C Piñero‐Lambea, L Serrano, M Lluch‐Senar
Microbial Biotechnology 14 (6), 2403-2419, 2021
122021
SURE editing: combining oligo-recombineering and programmable insertion/deletion of selection markers to efficiently edit the Mycoplasma pneumoniae genome
C Pinero-Lambea, E Garcia-Ramallo, S Miravet-Verde, R Burgos, ...
Nucleic Acids Research 50 (22), e127-e127, 2022
92022
Engineering Bacteria to Form a Biofilm and Induce Clumping in Caenorhabditis elegans
P Dorado-Morales, A Iglesias, G Zafrilla, A Valero, A Torres, ...
ACS Synthetic Biology 3 (12), 941-943, 2014
42014
ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small ORFs
S Miravet-Verde, R Mazzolini, C Segura-Morales, A Broto, M Lluch-Senar, ...
nature communications 15 (1), 2091, 2024
32024
The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities
M Dmitrijeva, HJ Ruscheweyh, L Feer, K Li, S Miravet-Verde, A Sintsova, ...
Nucleic Acids Research, gkae1004, 2024
2024
Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota
MD Maeke, X Yin, LC Wunder, C Vanni, T Richter-Heitmann, ...
2024
In silico RNA isoform screening to identify potential cancer driver exons with therapeutic applications
M Anglada-Girotto, L Ciampi, S Bonnal, SA Head, S Miravet-Verde, ...
Nature Communications 15 (1), 7039, 2024
2024
Engineering Mycoplasma pneumoniae to bypass the association with Guillain-Barré syndrome
A Broto, C Piñero-Lambea, C Segura-Morales, AP Tio-Gillen, WWJ Unger, ...
Microbes and infection, 105342, 2024
2024
Genome-resolved diversity and biosynthetic potential of the coral reef microbiome
L Paoli, F Wiederkehr, HJ Ruscheweyh, S Miravet-Verde, KSI Bistolas, ...
bioRxiv, 2024.08. 18.608444, 2024
2024
Disentangling the splicing factor programs underlying complex molecular phenotypes
M Anglada-Girotto, DF Moakley, C Zhang, S Miravet-Verde, A Califano, ...
bioRxiv, 2024.06. 21.600051, 2024
2024
robustica: customizable robust independent component analysis
M Anglada-Girotto, S Miravet-Verde, L Serrano, SA Head
BMC bioinformatics 23 (1), 519, 2022
2022
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