The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ... Nat Biotechnol 28 (8), 827, 2010 | 867 | 2010 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium SEQC/MAQC-III Consortium Nature Biotechnology 32 (9), 903-914, 2014 | 852 | 2014 |
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ... Genome biology 16, 1-12, 2015 | 403 | 2015 |
Detecting and correcting systematic variation in large-scale RNA sequencing data S Li, PP Łabaj, P Zumbo, P Sykacek, W Shi, L Shi, J Phan, PY Wu, ... Nature biotechnology 32 (9), 888-895, 2014 | 370 | 2014 |
Pathology imaging informatics for quantitative analysis of whole-slide images S Kothari, JH Phan, TH Stokes, MD Wang Journal of the American Medical Informatics Association 20 (6), 1099-1108, 2013 | 294 | 2013 |
k-Nearest neighbor models for microarray gene expression analysis and clinical outcome prediction RM Parry, W Jones, TH Stokes, JH Phan, RA Moffitt, H Fang, L Shi, ... The pharmacogenomics journal 10 (4), 292-309, 2010 | 136 | 2010 |
Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data Y Sha, JH Phan, MD Wang 2015 37th Annual International Conference of the IEEE Engineering in …, 2015 | 131 | 2015 |
Automatic batch-invariant color segmentation of histological cancer images S Kothari, JH Phan, RA Moffitt, TH Stokes, SE Hassberger, Q Chaudry, ... 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2011 | 121 | 2011 |
Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment JH Phan, RA Moffitt, TH Stokes, J Liu, AN Young, S Nie, MD Wang Trends Biotechnol 27 (6), 350-358, 2009 | 112 | 2009 |
Histological image classification using biologically interpretable shape-based features S Kothari, JH Phan, AN Young, MD Wang BMC Medical Imaging 13 (1), 9, 2013 | 95 | 2013 |
Eliminating tissue-fold artifacts in histopathological whole-slide images for improved image-based prediction of cancer grade S Kothari, JH Phan, MD Wang Journal of pathology informatics 4 (1), 22, 2013 | 84 | 2013 |
Computational nanomedicine: modeling of nanoparticle-mediated hyperthermal cancer therapy CD Kaddi, JH Phan, MD Wang Nanomedicine 8 (8), 1323-1333, 2013 | 76 | 2013 |
Removing batch effects from histopathological images for enhanced cancer diagnosis S Kothari, JH Phan, TH Stokes, AO Osunkoya, AN Young, MD Wang IEEE journal of biomedical and health informatics 18 (3), 765-772, 2013 | 67 | 2013 |
Discovery of lipidome alterations following traumatic brain injury via high-resolution metabolomics SR Hogan, JH Phan, M Alvarado-Velez, MD Wang, RV Bellamkonda, ... Journal of proteome research 17 (6), 2131-2143, 2018 | 63 | 2018 |
Biological interpretation of morphological patterns in histopathological whole-slide images S Kothari, JH Phan, AO Osunkoya, MD Wang Proceedings of the ACM conference on bioinformatics, computational biology …, 2012 | 63 | 2012 |
Multi-Scale Integration of-omic, Imaging, and Clinical Data in Biomedical Informatics J Phan, C Quo, C Cheng, M Wang IEEE, 2012 | 62 | 2012 |
Assessing the impact of human genome annotation choice on RNA-seq expression estimates PY Wu, JH Phan, MD Wang BMC bioinformatics 14 (11), S8, 2013 | 59 | 2013 |
Benchmarking RNA-Seq quantification tools R Chandramohan, PY Wu, JH Phan, MD Wang 2013 35th Annual International Conference of the IEEE Engineering in …, 2013 | 55 | 2013 |
Advances in molecular classification of renal neoplasms Q Yin-Goen, J Dale, WL Yang, JH Phan, RA Moffitt, JA Petros, MW Datta, ... Histol Histopathol 21 (3), 325-39, 2006 | 44 | 2006 |
chip artifact CORRECTion (caCORRECT): A Bioinformatics System for Quality Assurance of Genomics and Proteomics Array Data TH Stokes, RA Moffitt, JH Phan, MD Wang Annals of biomedical engineering 35, 1068-1080, 2007 | 43 | 2007 |