Near-optimal probabilistic RNA-seq quantification NL Bray, H Pimentel, P Melsted, L Pachter Nature biotechnology 34 (5), 525-527, 2016 | 8170 | 2016 |
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016 | 2473 | 2016 |
Spread of SARS-CoV-2 in the Icelandic population DF Gudbjartsson, A Helgason, H Jonsson, OT Magnusson, P Melsted, ... New England Journal of Medicine 382 (24), 2302-2315, 2020 | 1667 | 2020 |
Differential analysis of RNA-seq incorporating quantification uncertainty H Pimentel, NL Bray, S Puente, P Melsted, L Pachter Nature methods 14 (7), 687-690, 2017 | 1437 | 2017 |
Humoral immune response to SARS-CoV-2 in Iceland DF Gudbjartsson, GL Norddahl, P Melsted, K Gunnarsdottir, H Holm, ... New England Journal of Medicine 383 (18), 1724-1734, 2020 | 1102 | 2020 |
Mapping the human genetic architecture of COVID-19 Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ... Nature 600 (7889), 472-477, 2021 | 745 | 2021 |
Large-scale integration of the plasma proteome with genetics and disease E Ferkingstad, P Sulem, BA Atlason, G Sveinbjornsson, MI Magnusson, ... Nature genetics 53 (12), 1712-1721, 2021 | 459 | 2021 |
Efficient counting of k-mers in DNA sequences using a bloom filter P Melsted, JK Pritchard BMC bioinformatics 12, 1-7, 2011 | 368 | 2011 |
Modular, efficient and constant-memory single-cell RNA-seq preprocessing P Melsted*, AS Booeshaghi*, L Liu, F Gao, L Lu, KHJ Min, ... Nature biotechnology, 1-6, *co-first author, 2021 | 353* | 2021 |
The sequences of 150,119 genomes in the UK Biobank BV Halldorsson, HP Eggertsson, KHS Moore, H Hauswedell, O Eiriksson, ... Nature 607 (7920), 732-740, 2022 | 244 | 2022 |
Erratum: Near-optimal probabilistic RNA-seq quantification NL Bray, H Pimentel, P Melsted, L Pachter Nature Biotechnology 34 (8), 888-888, 2016 | 212 | 2016 |
Graphtyper enables population-scale genotyping using pangenome graphs HP Eggertsson, H Jonsson, S Kristmundsdottir, E Hjartarson, B Kehr, ... Nature genetics 49 (11), 1654-1660, 2017 | 208 | 2017 |
Comparative RNA sequencing reveals substantial genetic variation in endangered primates GH Perry, P Melsted, JC Marioni, Y Wang, R Bainer, JK Pickrell, ... Genome research 22 (4), 602-610, 2012 | 166 | 2012 |
Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs G Holley, P Melsted Genome biology 21, 1-20, 2020 | 151 | 2020 |
Genomic‐scale capture and sequencing of endogenous DNA from feces GH Perry, JC Marioni, P Melsted, Y Gilad Molecular ecology 19 (24), 5332-5344, 2010 | 151 | 2010 |
A discriminative learning approach to differential expression analysis for single-cell RNA-seq V Ntranos, L Yi, P Melsted, L Pachter Nature methods 16 (2), 163-166, 2019 | 144 | 2019 |
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs HP Eggertsson, S Kristmundsdottir, D Beyter, H Jonsson, A Skuladottir, ... Nature communications 10 (1), 5402, 2019 | 143 | 2019 |
The barcode, UMI, set format and BUStools P Melsted, V Ntranos, L Pachter Bioinformatics 35 (21), 4472-4473, 2019 | 131 | 2019 |
Pseudoalignment for metagenomic read assignment L Schaeffer, H Pimentel, N Bray, P Melsted, L Pachter Bioinformatics 33 (14), 2082-2088, 2017 | 105 | 2017 |
Insights into imprinting from parent-of-origin phased methylomes and transcriptomes F Zink, DN Magnusdottir, OT Magnusson, NJ Walker, TJ Morris, ... Nature genetics 50 (11), 1542-1552, 2018 | 101 | 2018 |