| Fast computation and applications of genome mappability T Derrien, J Estellé, S Marco Sola, DG Knowles, E Raineri, R Guigó, ... PloS one 7 (1), e30377, 2012 | 574 | 2012 |
| Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ... PLoS biology 8 (9), e1000475, 2010 | 471 | 2010 |
| Evolvability and hierarchy in rewired bacterial gene networks M Isalan, C Lemerle, K Michalodimitrakis, C Horn, P Beltrao, E Raineri, ... Nature 452 (7189), 840-845, 2008 | 373 | 2008 |
| Impact of genome reduction on bacterial metabolism and its regulation E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ... science 326 (5957), 1263-1268, 2009 | 370 | 2009 |
| Modelling and simulating generic RNA-Seq experiments with the flux simulator T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth Nucleic acids research 40 (20), 10073-10083, 2012 | 337 | 2012 |
| A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ... Nature communications 6 (1), 1-13, 2015 | 325 | 2015 |
| Whole-genome fingerprint of the DNA methylome during human B cell differentiation M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler, G Castellano, ... Nature genetics 47 (7), 746-756, 2015 | 314 | 2015 |
| Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers X Agirre, G Castellano, M Pascual, S Heath, M Kulis, V Segura, ... Genome research 25 (4), 478-487, 2015 | 159 | 2015 |
| Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage AC Queiros, R Beekman, R Vilarrasa-Blasi, M Duran-Ferrer, G Clot, ... Cancer cell 30 (5), 806-821, 2016 | 143 | 2016 |
| SNP calling by sequencing pooled samples E Raineri, L Ferretti, A Esteve-Codina, B Nevado, S Heath, ... BMC bioinformatics 13, 1-8, 2012 | 84 | 2012 |
| Distinct trends of DNA methylation patterning in the innate and adaptive immune systems RP Schuyler, A Merkel, E Raineri, L Altucci, E Vellenga, JHA Martens, ... Cell reports 17 (8), 2101-2111, 2016 | 68 | 2016 |
| The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild J Prado-Martinez, I Hernando-Herraez, B Lorente-Galdos, M Dabad, ... BMC genomics 14, 1-8, 2013 | 68 | 2013 |
| A novel translational control mechanism involving RNA structures within coding sequences J Jungfleisch, DD Nedialkova, I Dotu, KE Sloan, N Martinez-Bosch, ... Genome research 27 (1), 95-106, 2017 | 60 | 2017 |
| Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs A Esteve-Codina, Y Paudel, L Ferretti, E Raineri, HJ Megens, L Silió, ... BMC genomics 14, 1-14, 2013 | 59 | 2013 |
| Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture I Hernandez, H Dhiman, G Klanert, V Jadhav, N Auer, M Hanscho, ... Biotechnology and Bioengineering 116 (3), 677-692, 2019 | 45 | 2019 |
| Neutrality Tests for Sequences with Missing Data L Ferretti, E Raineri, S Ramos-Onsins Genetics, 2012 | 44 | 2012 |
| Electromagnetism and gauge theory on the permutation group S3 S Majid, E Raineri Journal of Geometry and Physics 44 (2-3), 129-155, 2002 | 41 | 2002 |
| Faster exact Markovian probability functions for motif occurrences: a DFA-only approach P Ribeca, E Raineri Bioinformatics 24 (24), 2839-2848, 2008 | 35 | 2008 |
| A note on exact differences between beta distributions in genomic (Methylation) studies E Raineri, M Dabad, S Heath PLoS One 9 (5), e97349, 2014 | 34 | 2014 |
| BlastR—fast and accurate database searches for non-coding RNAs G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ... Nucleic acids research 39 (16), 6886-6895, 2011 | 33 | 2011 |
