FMRP targets distinct mRNA sequence elements to regulate protein expression M Ascano, N Mukherjee, P Bandaru, JB Miller, JD Nusbaum, DL Corcoran, ... Nature 492 (7429), 382-386, 2012 | 743 | 2012 |
Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability N Mukherjee, DL Corcoran, JD Nusbaum, DW Reid, S Georgiev, ... Molecular cell 43 (3), 327-339, 2011 | 703 | 2011 |
A viral microRNA functions as an orthologue of cellular miR-155 E Gottwein, N Mukherjee, C Sachse, C Frenzel, WH Majoros, JTA Chi, ... Nature 450 (7172), 1096-1099, 2007 | 703 | 2007 |
Detecting actively translated open reading frames in ribosome profiling data L Calviello, N Mukherjee, E Wyler, H Zauber, A Hirsekorn, M Selbach, ... Nature methods 13 (2), 165-170, 2016 | 401 | 2016 |
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data DL Corcoran, S Georgiev, N Mukherjee, E Gottwein, RL Skalsky, ... Genome biology 12, 1-16, 2011 | 364 | 2011 |
Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines E Gottwein, DL Corcoran, N Mukherjee, RL Skalsky, M Hafner, ... Cell host & microbe 10 (5), 515-526, 2011 | 347 | 2011 |
Ribonomic Analysis of Human Pum1 Reveals cis-trans Conservation across Species despite Evolution of Diverse mRNA Target Sets AR Morris, N Mukherjee, JD Keene Molecular and cellular biology 28 (12), 4093-4103, 2008 | 197 | 2008 |
Integrative classification of human coding and noncoding genes through RNA metabolism profiles N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler Nature structural & molecular biology 24 (1), 86-96, 2017 | 175 | 2017 |
Global target mRNA specification and regulation by the RNA-binding protein ZFP36 N Mukherjee, NC Jacobs, M Hafner, EA Kennington, JD Nusbaum, ... Genome biology 15, 1-16, 2014 | 164 | 2014 |
Radiation enhances the invasive potential of primary glioblastoma cells via activation of the Rho signaling pathway GG Zhai, R Malhotra, M Delaney, D Latham, U Nestler, M Zhang, ... Journal of neuro-oncology 76, 227-237, 2006 | 148 | 2006 |
Systematic analysis of posttranscriptional gene expression AR Morris, N Mukherjee, JD Keene Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (2), 162-180, 2010 | 138 | 2010 |
Adenovirus‐mediated inhibition of survivin expression sensitizes human prostate cancer cells to paclitaxel in vitro and in vivo M Zhang, N Mukherjee, RS Bermudez, DE Latham, MA Delaney, ... The Prostate 64 (3), 293-302, 2005 | 128 | 2005 |
Coordinated posttranscriptional mRNA population dynamics during T‐cell activation N Mukherjee, PJ Lager, MB Friedersdorf, MA Thompson, JD Keene Molecular systems biology 5 (1), 288, 2009 | 113 | 2009 |
Control of thymic T cell maturation, deletion and egress by the RNA-binding protein HuR O Papadaki, S Milatos, S Grammenoudi, N Mukherjee, JD Keene, ... The Journal of Immunology 182 (11), 6779-6788, 2009 | 106 | 2009 |
Delivery of therapeutics targeting the mRNA-binding protein HuR using 3DNA nanocarriers suppresses ovarian tumor growth YH Huang, W Peng, N Furuuchi, J Gerhart, K Rhodes, N Mukherjee, ... Cancer research 76 (6), 1549-1559, 2016 | 93 | 2016 |
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data S Li, LM Liberman, N Mukherjee, PN Benfey, U Ohler Genome research 23 (10), 1730-1739, 2013 | 71 | 2013 |
MicroRNA target site identification by integrating sequence and binding information WH Majoros, P Lekprasert, N Mukherjee, RL Skalsky, DL Corcoran, ... Nature methods 10 (7), 630-633, 2013 | 68 | 2013 |
Deciphering human ribonucleoprotein regulatory networks N Mukherjee, HH Wessels, S Lebedeva, M Sajek, M Ghanbari, A Garzia, ... Nucleic acids research 47 (2), 570-581, 2019 | 60 | 2019 |
DDX54 regulates transcriptome dynamics during DNA damage response M Milek, K Imami, N Mukherjee, F De Bortoli, U Zinnall, O Hazapis, ... Genome research 27 (8), 1344-1359, 2017 | 59 | 2017 |
Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets TA Farazi, CS Leonhardt, N Mukherjee, A Mihailovic, S Li, KEA Max, ... Rna 20 (7), 1090-1102, 2014 | 58 | 2014 |