Industrial biotechnology of Pseudomonas putida: advances and prospects CW Anna Weimer, Michael Kohlstedt, Daniel C. Volke, Pablo I. Nikel Applied Microbiology and Biotechnology, 2020 | 184 | 2020 |
A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida P Calero, DC Volke, PT Lowe, CH Gotfredsen, D O’Hagan, PI Nikel Nature communications 11 (1), 5045, 2020 | 78 | 2020 |
Pseudomonas putida DC Volke, P Calero, PI Nikel Trends in Microbiology 28 (16), 512-513, 2020 | 75 | 2020 |
Synthetic control of plasmid replication enables target-and self-curing of vectors and expedites genome engineering of Pseudomonas putida DC Volke, L Friis, NT Wirth, J Turlin, PI Nikel Metabolic engineering communications 10, e00126, 2020 | 72 | 2020 |
Investigation of the methylerythritol 4-phosphate pathway for microbial terpenoid production through metabolic control analysis DC Volke, J Rohwer, R Fischer, S Jennewein Microbial cell factories 18, 1-15, 2019 | 68 | 2019 |
Getting bacteria in shape: synthetic morphology approaches for the design of efficient microbial cell factories DC Volke, PI Nikel Advanced Biosystems 2 (11), 1800111, 2018 | 63 | 2018 |
An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida C Batianis, E Kozaeva, SG Damalas, M Martín‐Pascual, DC Volke, ... Microbial biotechnology 13 (2), 368-385, 2020 | 61 | 2020 |
Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida DC Volke, J Turlin, V Mol, PI Nikel Microbial Biotechnology 13 (1), 222-232, 2020 | 59 | 2020 |
Modular (de) construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing DC Volke, RA Martino, E Kozaeva, AM Smania, PI Nikel Nature Communications 13 (1), 3026, 2022 | 48 | 2022 |
Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida E Kozaeva, S Volkova, MRA Matos, MP Mezzina, T Wulff, DC Volke, ... Metabolic Engineering 67, 373-386, 2021 | 44 | 2021 |
Negative regulation of plastidial isoprenoid pathway by herbivore-induced β-cyclocitral in Arabidopsis thaliana LPW Sirsha Mitra, Roger Estrada-Tejedor, Daniel C. Volke, Michael A ... Proceedings of the National Academy of Sciences 118 (10), e2008747118, 2021 | 43 | 2021 |
SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes E Martínez-García, S Fraile, E Algar, T Aparicio, E Velázquez, B Calles, ... Nucleic Acids Research 51 (D1), D1558-D1567, 2023 | 40 | 2023 |
Merging automation and fundamental discovery into the design–build–test–learn cycle of nontraditional microbes N Gurdo, DC Volke, PI Nikel Trends in Biotechnology 40 (10), 1148-1159, 2022 | 33 | 2022 |
Non‐invasive, ratiometric determination of intracellular pH in Pseudomonas species using a novel genetically encoded indicator A Arce‐Rodríguez, DC Volke, S Bense, S Häussler, PI Nikel Microbial biotechnology 12 (4), 799-813, 2019 | 31 | 2019 |
Automating the design-build-test-learn cycle towards next-generation bacterial cell factories N Gurdo, DC Volke, D McCloskey, PI Nikel New Biotechnology 74, 1-15, 2023 | 30 | 2023 |
A nonconventional archaeal fluorinase identified by in silico mining for enhanced fluorine biocatalysis I Pardo, D Bednar, P Calero, DC Volke, J Damborský, PI Nikel ACS catalysis 12 (11), 6570-6577, 2022 | 30 | 2022 |
Emergent CRISPR–Cas-based technologies for engineering non-model bacteria DC Volke, E Orsi, PI Nikel Current Opinion in Microbiology 75, 102353, 2023 | 26 | 2023 |
Cofactor specificity of glucose-6-phosphate dehydrogenase isozymes in Pseudomonas putida reveals a general principle underlying glycolytic strategies in bacteria DC Volke, K Olavarría, PI Nikel mSystems, 00014-21, 2021 | 22 | 2021 |
Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model D Bujdoš, B Popelářová, DC Volke, PI Nikel, N Sonnenschein, P Dvořák Metabolic Engineering 75, 29-46, 2023 | 13 | 2023 |
Rapid genome engineering of Pseudomonas assisted by fluorescent markers and tractable curing of plasmids DC Volke, NT Wirth, PI Nikel Bio-protocol 11 (4), e3917-e3917, 2021 | 12 | 2021 |