| Low-affinity binding sites and the transcription factor specificity paradox in eukaryotes JF Kribelbauer, C Rastogi, HJ Bussemaker, RS Mann Annual review of cell and developmental biology 35 (1), 357-379, 2019 | 180 | 2019 |
| Quantitative analysis of the DNA methylation sensitivity of transcription factor complexes JF Kribelbauer, O Laptenko, S Chen, GD Martini, WA Freed-Pastor, ... Cell reports 19 (11), 2383-2395, 2017 | 108 | 2017 |
| Accurate and sensitive quantification of protein-DNA binding affinity C Rastogi, HT Rube, JF Kribelbauer, J Crocker, RE Loker, GD Martini, ... Proceedings of the National Academy of Sciences 115 (16), E3692-E3701, 2018 | 100 | 2018 |
| Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding S Rao, TP Chiu, JF Kribelbauer, RS Mann, HJ Bussemaker, R Rohs Epigenetics & chromatin 11, 1-11, 2018 | 77 | 2018 |
| Toward a mechanistic understanding of DNA methylation readout by transcription factors JF Kribelbauer, XJ Lu, R Rohs, RS Mann, HJ Bussemaker Journal of molecular biology 432 (6), 1801-1815, 2020 | 76 | 2020 |
| Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning HT Rube, C Rastogi, S Feng, JF Kribelbauer, A Li, B Becerra, LAN Melo, ... Nature biotechnology 40 (10), 1520-1527, 2022 | 68 | 2022 |
| Structural basis for conserved regulation and adaptation of the signal recognition particle targeting complex K Wild, G Bange, D Motiejunas, J Kribelbauer, A Hendricks, B Segnitz, ... Journal of molecular biology 428 (14), 2880-2897, 2016 | 50 | 2016 |
| A unified approach for quantifying and interpreting DNA shape readout by transcription factors HT Rube, C Rastogi, JF Kribelbauer, HJ Bussemaker Molecular systems biology 14 (2), e7902, 2018 | 42 | 2018 |
| SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site L Zhang, GD Martini, HT Rube, JF Kribelbauer, C Rastogi, VD FitzPatrick, ... Genome research 28 (1), 111-121, 2018 | 37 | 2018 |
| Context-dependent gene regulation by homeodomain transcription factor complexes revealed by shape-readout deficient proteins JF Kribelbauer, RE Loker, S Feng, C Rastogi, N Abe, HT Rube, ... Molecular cell 78 (1), 152-167. e11, 2020 | 30 | 2020 |
| Chromatin modules and their implication in genomic organization and gene regulation G van Mierlo, O Pushkarev, JF Kribelbauer, B Deplancke Trends in Genetics 39 (2), 140-153, 2023 | 13 | 2023 |
| A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation G Llimos, V Gardeux, U Koch, JF Kribelbauer, A Hafner, D Alpern, ... Nature communications 13 (1), 2042, 2022 | 6 | 2022 |
| Context transcription factors establish cooperative environments and mediate enhancer communication JF Kribelbauer, O Pushkarev, V Gardeux, J Russeil, G van Mierlo, ... bioRxiv, 2023.05. 05.539543, 2023 | 1 | 2023 |
| Probing molecular specificity with deep sequencing and biophysically interpretable machine learning H Tomas Rube, C Rastogi, S Feng, JF Kribelbauer, A Li, B Becerra, ... bioRxiv, 2021.06. 30.450414, 2021 | 1 | 2021 |
| Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs AM Ekdahl, T Julien, S Suraj, J Kribelbauer, S Tavazoie, PL Freddolino, ... bioRxiv, 2024.06. 20.599902, 2024 | | 2024 |
| Non-coding variants impact cis-regulatory coordination in a cell type-specific manner O Pushkarev, G van Mierlo, JF Kribelbauer, W Saelens, V Gardeux, ... bioRxiv, 2023.10. 11.561870, 2023 | | 2023 |
| Group ID U11829 D Alpern, A Meireles Filho, A Carlos, S Balasubramanian, ... | | |
