A review of computational strategies for denoising and imputation of single-cell transcriptomic data L Patruno, D Maspero, F Craighero, F Angaroni, M Antoniotti, A Graudenzi Briefings in bioinformatics 22 (4), bbaa222, 2021 | 50 | 2021 |
A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations S Milite, R Bergamin, L Patruno, N Calonaci, G Caravagna Bioinformatics 38 (9), 2512-2518, 2022 | 10 | 2022 |
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems L Patruno, F Craighero, D Maspero, A Graudenzi, C Damiani Information and Computation 281, 104798, 2021 | 6 | 2021 |
Epigenetic heritability of cell plasticity drives cancer drug resistance through one-to-many genotype to phenotype mapping J Fernandez-Mateos, S Milite, E Oliveira, G Vlachogiannis, B Chen, ... bioRxiv, 2023.11. 15.567140, 2023 | 2 | 2023 |
Clonal Lineage Tracing with Somatic Delivery of Recordable Barcodes Reveals Migration Histories of Metastatic Prostate Cancer RN Serio, A Scheben, B Lu, DV Gargiulo, L Patruno, CL Buckholtz, ... Cancer Discovery, OF1-OF20, 2024 | 1 | 2024 |
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing L Patruno, S Milite, R Bergamin, N Calonaci, A D’Onofrio, F Anselmi, ... PLOS Computational Biology 19 (11), e1011557, 2023 | 1 | 2023 |
A closed-loop optimization framework for personalized cancer therapy design F Angaroni, M Pennati, L Patruno, D Maspero, M Antoniotti, A Graudenzi 2020 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2020 | 1 | 2020 |
Computational strategies for single-cell multi-omics data analysis and integration L Patruno Università degli Studi di Milano-Bicocca, 2023 | | 2023 |
Check for updates Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data D Maspero, F Angaroni, L Patruno Artificial Life and Evolutionary Computation: 16th Italian Workshop, WIVACE …, 2023 | | 2023 |
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data D Maspero, F Angaroni, L Patruno, D Ramazzotti, D Posada, A Graudenzi Italian Workshop on Artificial Life and Evolutionary Computation, 70-81, 2022 | | 2022 |
cyTRON and cyTRON/JS: Two Cytoscape-Based Applications for the Inference of Cancer Evolution Models L Patruno, E Galimberti, D Ramazzotti, G Caravagna, L De Sano, ... Computational Intelligence Methods for Bioinformatics and Biostatistics …, 2020 | | 2020 |
cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models L Patruno, E Galimberti, D Ramazzotti, G Caravagna, L De Sano, ... arXiv preprint arXiv:1705.03067, 2017 | | 2017 |
Comparison tools for lncRNA identification: analysis among plants and humans........... 50 Tatianne da Costa Negri, Alexandre Rossi Paschoal and Wonder Alexandre Luz Alves … F Angaroni, M Pennati, L Patruno, D Maspero, M Antoniotti, A Graudenzi, ... | | |