PPI_SVM: PREDICTION OF PROTEIN-PROTEIN INTERACTIONS USING MACHINE LEARNING, DOMAIN-DOMAIN AFFINITIES AND FREQUENCY TABLES P Chatterjee, S Basu, M Kundu, M Nasipuri, D Plewczynski CELLULAR & MOLECULAR BIOLOGY LETTERS 16, 264-278, 2011 | 82 | 2011 |
PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines P Chatterjee, S Basu, M Kundu, M Nasipuri, D Plewczynski J Mol Model 17, 2191–2201, 2011 | 38 | 2011 |
Analysis of protein targets in pathogen–host interaction in infectious diseases: a case study on Plasmodium falciparum and Homo sapiens interaction network S Saha, K Sengupta, P Chatterjee, S Basu, M Nasipuri Briefings in Functional Genomics, elx024, https://doi.org/10.1093/bfgp/elx, 2017 | 33 | 2017 |
FunPred-1: Protein function prediction from a protein interaction network using neighborhood analysis. NM Saha Sovan, Chatterjee Piyali, Basu Subhadip, Kundu Mahantapas Cell Mol Biol Lett. 19 (4), 675-91, 2014 | 27 | 2014 |
Drug repurposing for COVID-19 using computational screening: Is Fostamatinib/R406 a potential candidate? S Saha, AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, ... Methods 203, 564-574, 2022 | 23 | 2022 |
Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical features S Saha, A Prasad, P Chatterjee, M Nasipuri, S Basu J Bioinform Comput Biol. 16 (6), 1850025,doi: 10.1142/S0219720018500257, 2018 | 15 | 2018 |
Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical features. S Saha, A Prasad, P Chatterjee, S Basu, M Nasipuri Journal of bioinformatics and computational biology 16 (6), 1850025-1850025 …, 2018 | 15 | 2018 |
FunPred 3.0: Improved protein function prediction using protein interaction network S Saha, P Chatterjee, S Basu, M Nasipuri, D Plewczynski PeerJ, PeerJ7: e6830https://doi.org/10.7717/pee, 2019 | 14 | 2019 |
Improving Prediction of Protein Function from Protein Interaction network using Intelligent Neighborhood approach S Saha, P Chatterjee, S Basu, M Kundu, M Nasipuri CODIS-2012, 604-607, 2012 | 14 | 2012 |
Improving Prediction of Protein Secondary Structure using physicochemical properties of Amino Acids P Chatterjee, S Basu, M Nasipuri International Symposium on Biocomputing, 2010 | 13 | 2010 |
Protein function prediction from dynamic protein interaction network using gene expression data S Saha, A Prasad, P Chatterjee, S Basu, M Nasipuri Journal of Bioinformatics and Computational Biology 17 (4), 1950025-1 to …, 2019 | 12 | 2019 |
HdK-means: Hadoop based parallel K-means clustering for big data SS Bandyopadhyay, AK Halder, P Chatterjee, M Nasipuri, S Basu 2017 IEEE Calcutta Conference (CALCON), 452-456, 2017 | 12 | 2017 |
PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach P Chatterjee, S Basu, J Zubek, M Kundu, M Nasipuri, D Plewczynski Journal of Molecular Modeling 22, 1-15, 2016 | 11 | 2016 |
Detection of spreader nodes in human- SARS-CoV protein-protein interaction network S Saha, P Chatterjee, M Nasipuri, S Basu PeerJ 9 (e12117), 2021 | 10 | 2021 |
Is Fostamatinib a possible drug for COVID-19?–A computational study S Saha, AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, ... OSF Preprints, 2020 | 10 | 2020 |
Protein Function Prediction from Protein Interaction Network Using Bottom-up L2L Apriori Algorithm A Prasad, S Saha, P Chatterjee, S Basu, M Nasipuri CICBA 2017 776, 3-16, 2017 | 10 | 2017 |
Improved prediction of Multi-domains in protein chains using a Support Vector Machine P Chatterjee, S Basu, M Kundu, M Nasipuri International Journal of Recent Trends in Engineering 2 (3), 78-81, 2009 | 10 | 2009 |
ML-DTD: machine learning-based drug target discovery for the potential treatment of COVID-19 S Saha, P Chatterjee, AK Halder, M Nasipuri, S Basu, D Plewczynski Vaccines 10 (10), 1643, 2022 | 9 | 2022 |
3gClust: Human Protein Cluster Analysis AK Halder, P Chatterjee, M Nasipuri, D Plewczynski, S Basu IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (6 …, 2018 | 9 | 2018 |
Computational modeling of human-nCoV protein-protein interaction network S Saha, AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, S Basu Methods 203, 488-497, 2022 | 8 | 2022 |