| Bioinformatic and statistical analysis of adaptive immune repertoires V Greiff, E Miho, U Menzel, ST Reddy Trends in immunology 36 (11), 738-749, 2015 | 209 | 2015 |
| Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires E Miho, A Yermanos, CR Weber, CT Berger, ST Reddy, V Greiff Frontiers in immunology 9, 224, 2018 | 189 | 2018 |
| Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook, A Valai, T Lopes, ... Cell reports 19 (7), 1467-1478, 2017 | 171 | 2017 |
| Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ... Nature immunology 18 (12), 1274-1278, 2017 | 167 | 2017 |
| A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ... Cell Reports 34 (11), 2021 | 154 | 2021 |
| Traditional and digital biomarkers: two worlds apart? LM Babrak, J Menetski, M Rebhan, G Nisato, M Zinggeler, N Brasier, ... Digital biomarkers 3 (2), 92-102, 2019 | 130 | 2019 |
| Large-scale network analysis reveals the sequence space architecture of antibody repertoires E Miho, R Roškar, V Greiff, ST Reddy Nature communications 10 (1), 1321, 2019 | 119 | 2019 |
| Learning the high-dimensional immunogenomic features that predict public and private antibody repertoires V Greiff, CR Weber, J Palme, U Bodenhofer, E Miho, U Menzel, ST Reddy The Journal of Immunology 199 (8), 2985-2997, 2017 | 115 | 2017 |
| In silico proof of principle of machine learning-based antibody design at unconstrained scale R Akbar, PA Robert, CR Weber, M Widrich, R Frank, M Pavlović, ... MAbs 14 (1), 2031482, 2022 | 88 | 2022 |
| Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires AJ Brown, I Snapkov, R Akbar, M Pavlović, E Miho, GK Sandve, V Greiff Molecular Systems Design & Engineering 4 (4), 701-736, 2019 | 66 | 2019 |
| Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim) A Yermanos, V Greiff, NJ Krautler, U Menzel, A Dounas, E Miho, ... Bioinformatics 33 (24), 3938-3946, 2017 | 50 | 2017 |
| Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences E Smakaj, L Babrak, M Ohlin, M Shugay, B Briney, D Tosoni, C Galli, ... Bioinformatics 36 (6), 1731-1739, 2020 | 47 | 2020 |
| Maturation of the human immunoglobulin heavy chain repertoire with age M Ghraichy, JD Galson, A Kovaltsuk, V Von Niederhäusern, ... Frontiers in immunology 11, 1734, 2020 | 45 | 2020 |
| Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction PA Robert, R Akbar, R Frank, M Pavlović, M Widrich, I Snapkov, ... Nature Computational Science 2 (12), 845-865, 2022 | 34 | 2022 |
| The future of blood testing is the immunome RA Arnaout, ETL Prak, N Schwab, F Rubelt, ... Frontiers in Immunology 12, 626793, 2021 | 32 | 2021 |
| Synthetic standards combined with error and bias correction improve the accuracy and quantitative resolution of antibody repertoire sequencing in human naïve and memory B cells S Friedensohn, JM Lindner, V Cornacchione, M Iazeolla, E Miho, A Zingg, ... Frontiers in immunology 9, 1401, 2018 | 32 | 2018 |
| High-throughput sequencing of human immunoglobulin variable regions with subtype identification M Schanz, T Liechti, O Zagordi, E Miho, ST Reddy, HF Günthard, A Trkola, ... PloS one 9 (11), e111726, 2014 | 29 | 2014 |
| One billion synthetic 3D-antibody-antigen complexes enable unconstrained machine-learning formalized investigation of antibody specificity prediction PA Robert, R Akbar, R Frank, M Pavlović, M Widrich, I Snapkov, ... BioRXiV, 2021.07. 06.451258, 2021 | 25 | 2021 |
| The real-world data challenges radar: a review on the challenges and risks regarding the use of real-world data F Grimberg, PM Asprion, B Schneider, E Miho, L Babrak, A Habbabeh Digital Biomarkers 5 (2), 148-157, 2021 | 22 | 2021 |
| The fundamental principles of antibody repertoire architecture revealed by large-scale network analysis E Miho, V Greifft, R Roškar, ST Reddy BioRxiv, 124578, 2017 | 13 | 2017 |
