Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1525 | 2017 |
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 797 | 2013 |
Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies S Boisvert, F Laviolette, J Corbeil Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, 2010 | 667 | 2010 |
Ray Meta: scalable de novo metagenome assembly and profiling S Boisvert, F Raymond, É Godzaridis, F Laviolette, J Corbeil Genome biology 13, 1-13, 2012 | 656 | 2012 |
Antimicrobial resistance prediction in PATRIC and RAST JJ Davis, S Boisvert, T Brettin, RW Kenyon, C Mao, R Olson, R Overbeek, ... Scientific reports 6 (1), 27930, 2016 | 224 | 2016 |
Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy JM Ubeda, D Légaré, F Raymond, AA Ouameur, S Boisvert, P Rigault, ... Genome biology 9, 1-16, 2008 | 207 | 2008 |
Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species F Raymond, S Boisvert, G Roy, JF Ritt, D Legare, A Isnard, M Stanke, ... Nucleic acids research 40 (3), 1131-1147, 2012 | 196 | 2012 |
Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between … A Rochette, F Raymond, JM Ubeda, M Smith, N Messier, S Boisvert, ... BMC genomics 9, 1-26, 2008 | 180 | 2008 |
Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children F Raymond, J Carbonneau, N Boucher, L Robitaille, S Boisvert, WK Wu, ... Journal of clinical microbiology 47 (3), 743-750, 2009 | 137 | 2009 |
Multiple Mutations in Heterogeneous Miltefosine-Resistant Leishmania major Population as Determined by Whole Genome Sequencing AC Coelho, S Boisvert, A Mukherjee, P Leprohon, J Corbeil, M Ouellette PLoS neglected tropical diseases 6 (2), e1512, 2012 | 107 | 2012 |
Telomeric gene deletion and intrachromosomal amplification in antimony‐resistant Leishmania A Mukherjee, S Boisvert, RL Monte‐Neto, AC Coelho, F Raymond, ... Molecular microbiology 88 (1), 189-202, 2013 | 88 | 2013 |
Endonucleases: tools to correct the dystrophin gene J Rousseau, P Chapdelaine, S Boisvert, LP Almeida, J Corbeil, ... The journal of gene medicine 13 (10), 522-537, 2011 | 66 | 2011 |
HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels S Boisvert, M Marchand, F Laviolette, J Corbeil Retrovirology 5, 1-14, 2008 | 46 | 2008 |
Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome G Keeble-Gagnère, P Rigault, J Tibbits, R Pasam, M Hayden, K Forrest, ... Genome biology 19, 1-18, 2018 | 34 | 2018 |
Phenetic comparison of prokaryotic genomes using k-mers M Déraspe, F Raymond, S Boisvert, A Culley, PH Roy, F Laviolette, ... Molecular biology and evolution 34 (10), 2716-2729, 2017 | 29 | 2017 |
Draft genome of the American Eel (Anguilla rostrata) SA Pavey, M Laporte, E Normandeau, J Gaudin, L Letourneau, S Boisvert, ... Molecular ecology resources 17 (4), 806-811, 2017 | 23 | 2017 |
Genome sequences of three Brucella canis strains isolated from humans and a dog MVC Viana, AR Wattam, D Govil Batra, S Boisvert, TS Brettin, M Frace, ... Genome Announcements 5 (8), 10.1128/genomea. 01688-16, 2017 | 6 | 2017 |
Flexible protein database based on amino acid k-mers M Déraspe, S Boisvert, F Laviolette, PH Roy, J Corbeil Scientific Reports 12 (1), 9101, 2022 | 5 | 2022 |
Fast protein database as a service with kAAmer M Déraspe, S Boisvert, F Laviolette, PH Roy, J Corbeil bioRxiv, 2020.04. 01.019984, 2020 | 3 | 2020 |
Human analysts at superhuman scales: What has friendly software to do? E Godzaridis, S Boisvert, F Xia, M Kandel, S Behling, B Long, CP Sosa, ... Big data 1 (4), 227-236, 2013 | 3 | 2013 |