Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature Biotechnology 37 (8), 852-857, 2019 | 15040 | 2019 |
PICRUSt2 for prediction of metagenome functions GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel, JR Brown, CM Taylor, ... Nature Biotechnology 38, 685–688, 2020 | 3833* | 2020 |
The human tumor microbiome is composed of tumor type–specific intracellular bacteria D Nejman, I Livyatan, G Fuks, N Gavert, Y Zwang, LT Geller, ... Science 368 (6494), 973-980, 2020 | 1394 | 2020 |
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research AM Comeau, GM Douglas, MGI Langille mSystems 2 (1), e00127-16, 2017 | 531 | 2017 |
Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway R Singh, S Chandrashekharappa, SR Bodduluri, BV Baby, B Hegde, ... Nature Communications 10 (1), 89, 2019 | 512 | 2019 |
Microbiome differential abundance methods produce different results across 38 datasets JT Nearing, GM Douglas, MG Hayes, J MacDonald, DK Desai, N Allward, ... Nature Communications 13 (1), 342, 2022 | 447 | 2022 |
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches JT Nearing, GM Douglas, AM Comeau, MGI Langille PeerJ 6, e5364, 2018 | 320 | 2018 |
Predicting the functional potential of the microbiome from marker genes using PICRUSt GM Douglas, RG Beiko, MGI Langille Microbiome analysis: Methods and protocols, 169-177, 2018 | 205 | 2018 |
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris GM Douglas, G Gos, KA Steige, A Salcedo, K Holm, EB Josephs, ... Proceedings of the National Academy of Sciences 112 (9), 2806-2811, 2015 | 154 | 2015 |
Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn’s disease GM Douglas, R Hansen, CMA Jones, KA Dunn, AM Comeau, ... Microbiome 6 (1), 13, 2018 | 101 | 2018 |
A Genome-Wide Association Study of Apple Quality and Scab Resistance KA McClure, KM Gardner, GM Douglas, J Song, CF Forney, J DeLong, ... The Plant Genome 11 (1), 170075, 2018 | 75 | 2018 |
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes GM Douglas, MGI Langille Genome Biology and Evolution 11 (10), 2750–2766, 2019 | 59 | 2019 |
Dissecting community structure in wild blueberry root and soil microbiome S Yurgel, GM Douglas, A Dussault, D Percival, M Langille Frontiers in Microbiology 9, 1187, 2018 | 57 | 2018 |
The coupling of taxonomy and function in microbiomes SA Inkpen, GM Douglas, TDP Brunet, K Leuschen, WF Doolittle, ... Biology & Philosophy 32, 1225-1243, 2017 | 55 | 2017 |
Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection MS McElroy, AJR Navarro, G Mustiga, C Stack, S Gezan, G Peña, ... Frontiers in plant science 9, 343, 2018 | 52 | 2018 |
Variation in bacterial and eukaryotic communities associated with natural and managed wild blueberry habitats SN Yurgel, GM Douglas, AM Comeau, M Mammoliti, A Dusault, D Percival, ... Phytobiomes 1 (2), 102-113, 2017 | 43 | 2017 |
Metagenomic functional shifts to plant induced environmental changes SN Yurgel, JT Nearing, GM Douglas, MGI Langille Frontiers in Microbiology 10, 1682, 2019 | 42 | 2019 |
Polymorphism analysis reveals reduced negative selection and elevated rate of insertions and deletions in intrinsically disordered protein regions T Khan, GM Douglas, P Patel, AN Nguyen Ba, AM Moses Genome Biology and Evolution 7 (6), 1815-1826, 2015 | 37 | 2015 |
Re-evaluating the relationship between missing heritability and the microbiome GM Douglas, JP Bielawski, MGI Langille Microbiome 8, 87, 2020 | 24 | 2020 |
Genic Selection Within Prokaryotic Pangenomes GM Douglas, BJ Shapiro Genome Biology and Evolution 13 (11), evab234, 2021 | 15 | 2021 |