Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes BP Tu, A Kudlicki, M Rowicka, SL McKnight Science 310 (5751), 1152-1158, 2005 | 1030 | 2005 |
Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing N Crosetto, A Mitra, MJ Silva, M Bienko, N Dojer, Q Wang, E Karaca, ... Nature methods 10 (4), 361-365, 2013 | 532 | 2013 |
Comprehensive mapping of histone modifications at DNA double-strand breaks deciphers repair pathway chromatin signatures T Clouaire, V Rocher, A Lashgari, C Arnould, M Aguirrebengoa, ... Molecular cell 72 (2), 250-262. e6, 2018 | 295 | 2018 |
Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes F Aymard, M Aguirrebengoa, E Guillou, BM Javierre, B Bugler, C Arnould, ... Nature structural & molecular biology 24 (4), 353-361, 2017 | 259 | 2017 |
Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of N-end rule and ubiquitin-fusion degradation pathway substrates in … C Wójcik, M Rowicka, A Kudlicki, D Nowis, E McConnell, M Kujawa, ... Molecular biology of the cell 17 (11), 4606-4618, 2006 | 217 | 2006 |
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites A Promonet, I Padioleau, Y Liu, L Sanz, A Biernacka, AL Schmitz, ... Nature communications 11 (1), 3940, 2020 | 147 | 2020 |
Strategies for achieving high sequencing accuracy for low diversity samples and avoiding sample bleeding using illumina platform A Mitra, M Skrzypczak, K Ginalski, M Rowicka PloS one 10 (4), e0120520, 2015 | 131 | 2015 |
High-resolution timing of cell cycle-regulated gene expression M Rowicka, A Kudlicki, BP Tu, Z Otwinowski Proceedings of the National Academy of Sciences 104 (43), 16892-16897, 2007 | 102 | 2007 |
Comprehensive structural and substrate specificity classification of the Saccharomyces cerevisiae methyltransferome T Wlodarski, J Kutner, J Towpik, L Knizewski, L Rychlewski, A Kudlicki, ... PloS one 6 (8), e23168, 2011 | 87 | 2011 |
Comparison of pattern detection methods in microarray time series of the segmentation clock ML Dequeant, S Ahnert, H Edelsbrunner, TMA Fink, EF Glynn, G Hattem, ... PLoS One 3 (8), e2856, 2008 | 76 | 2008 |
qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing Y Zhu, A Biernacka, B Pardo, N Dojer, R Forey, M Skrzypczak, B Fongang, ... Nature communications 10 (1), 2313, 2019 | 51 | 2019 |
A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq J Yang, A Mitra, N Dojer, S Fu, M Rowicka, AR Brasier Nucleic acids research 41 (15), 7240-7259, 2013 | 46 | 2013 |
i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks A Biernacka, Y Zhu, M Skrzypczak, R Forey, B Pardo, M Grzelak, J Nde, ... Communications biology 1 (1), 181, 2018 | 45 | 2018 |
SCEPTRANS: an online tool for analyzing periodic transcription in yeast A Kudlicki, M Rowicka, Z Otwinowski Bioinformatics 23 (12), 1559-1561, 2007 | 45 | 2007 |
Modulation of gene expression regulated by the transcription factor NF-κB/RelA X Li, Y Zhao, B Tian, M Jamaluddin, A Mitra, J Yang, M Rowicka, ... Journal of Biological Chemistry 289 (17), 11927-11944, 2014 | 39 | 2014 |
Probabilistic approach to predicting substrate specificity of methyltransferases T Szczepińska, J Kutner, M Kopczyński, K Pawłowski, A Dziembowski, ... PLoS computational biology 10 (3), e1003514, 2014 | 29 | 2014 |
Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress W Shi, T Vu, D Boucher, A Biernacka, J Nde, RK Pandita, J Straube, ... Blood, The Journal of the American Society of Hematology 129 (18), 2479-2492, 2017 | 22 | 2017 |
Predicting proteome dynamics using gene expression data K Kuchta, J Towpik, A Biernacka, J Kutner, A Kudlicki, K Ginalski, ... Scientific reports 8 (1), 13866, 2018 | 20 | 2018 |
A role for the Mre11-Rad50-Xrs2 complex in gene expression and chromosome organization R Forey, A Barthe, M Tittel-Elmer, M Wery, MB Barrault, C Ducrot, ... Molecular cell 81 (1), 183-197. e6, 2021 | 18 | 2021 |
The crystallographic fast Fourier transform. Recursive symmetry reduction A Kudlicki, M Rowicka, Z Otwinowski Acta Crystallographica Section A: Foundations of Crystallography 63 (6), 465-480, 2007 | 16 | 2007 |