Synthetic promoter design in Escherichia coli based on a deep generative network Y Wang, H Wang, L Wei, S Li, L Liu, X Wang Nucleic acids research 48 (12), 6403-6412, 2020 | 142 | 2020 |
Genome-wide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valleys Y Li, H Zheng, Q Wang, C Zhou, L Wei, X Liu, W Zhang, Y Zhang, Z Du, ... Genome biology 19 (1), 1-16, 2018 | 121 | 2018 |
The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence X Zhang, X Liu, Z Du, L Wei, H Fang, Q Dong, J Niu, Y Li, J Gao, ... Genome Research 31 (7), 1121-1135, 2021 | 45 | 2021 |
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads J Li, L Wei, X Zhang, W Zhang, H Wang, B Zhong, Z Xie, H Lv, X Wang Briefings in Bioinformatics, 2021 | 33 | 2021 |
Dynamic transcriptome profiling in DNA damage-induced cellular senescence and transient cell-cycle arrest Z Zhao, Q Dong, X Liu, L Wei, L Liu, Y Li, X Wang Genomics 112 (2), 1309-1317, 2020 | 28 | 2020 |
hECA: The cell-centric assembly of a cell atlas S Chen, Y Luo, H Gao, F Li, Y Chen, J Li, R You, M Hao, H Bian, X Xi, ... Iscience 25 (5), 104318, 2022 | 26 | 2022 |
Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence Q Dong, L Wei, MQ Zhang, X Wang Aging (Albany NY) 10 (6), 1489, 2018 | 25 | 2018 |
Regulation by competition: a hidden layer of gene regulatory network L Wei, Y Yuan, T Hu, S Li, T Cheng, J Lei, Z Xie, MQ Zhang, X Wang Quantitative Biology 7 (2), 110-121, 2019 | 24 | 2019 |
ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features J Li, Z Qiu, C Zhang, S Chen, M Wang, Q Meng, H Lu, L Wei, H Lv, ... European Radiology 33 (2), 893-903, 2023 | 17 | 2023 |
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data W Zhang, H Xu, R Qiao, B Zhong, X Zhang, J Gu, X Zhang, L Wei, X Wang Briefings in Bioinformatics 23 (1), bbab362, 2022 | 16 | 2022 |
HCSGD: an integrated database of human cellular senescence genes Q Dong, H Han, X Liu, L Wei, W Zhang, Z Zhao, MQ Zhang, X Wang Journal of Genetics and Genomics 44 (5), 227-234, 2017 | 15 | 2017 |
Deep flanking sequence engineering for efficient promoter design using DeepSEED P Zhang, H Wang, H Xu, L Wei, L Liu, Z Hu, X Wang Nature Communications 14 (1), 6309, 2023 | 14 | 2023 |
YTHDF3 modulates hematopoietic stem cells by recognizing RNA m6A modification on Ccnd1 X Zhang, T Cong, L Wei, B Zhong, X Wang, J Sun, S Wang, MM Xu, P Zhu, ... Haematologica 107 (10), 2381, 2022 | 14 | 2022 |
Decoding functional cell–cell communication events by multi-view graph learning on spatial transcriptomics H Li, T Ma, M Hao, W Guo, J Gu, X Zhang, L Wei Briefings in Bioinformatics 24 (6), bbad359, 2023 | 12 | 2023 |
Characterizing microRNA-mediated modulation of gene expression noise and its effect on synthetic gene circuits L Wei, S Li, P Zhang, T Hu, MQ Zhang, Z Xie, X Wang Cell Reports 36 (8), 109573, 2021 | 12 | 2021 |
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images T Hu, S Xu, L Wei, X Zhang, X Wang Bioinformatics 37 (2), 285-287, 2021 | 11 | 2021 |
Single-cell transcriptomes reveal characteristics of micrornas in gene expression noise reduction T Hu, L Wei, S Li, T Cheng, X Zhang, X Wang Genomics, Proteomics & Bioinformatics 19 (3), 394-407, 2021 | 10 | 2021 |
A large-scale CRISPR screen and identification of essential genes in cellular senescence bypass X Liu, L Wei, Q Dong, L Liu, MQ Zhang, Z Xie, X Wang Aging (Albany NY) 11 (12), 4011, 2019 | 10 | 2019 |
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA X Zhang, X Jia, B Zhong, L Wei, J Li, W Zhang, H Fang, Y Li, Y Lu, ... Briefings in Bioinformatics 23 (4), bbac278, 2022 | 7* | 2022 |
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data W Zhang, L Wei, J Huang, B Zhong, J Li, H Xu, S He, Y Liu, J Liu, H Lv, ... Bioinformatics 37 (22), 4251-4252, 2021 | 6 | 2021 |