| A single-cell analysis reveals tumor heterogeneity and immune environment of acral melanoma C Zhang, H Shen, T Yang, T Li, X Liu, J Wang, Z Liao, J Wei, J Lu, H Liu, ... Nature communications 13 (1), 7250, 2022 | 55 | 2022 |
| Development of an AI system for accurately diagnose hepatocellular carcinoma from computed tomography imaging data M Wang, F Fu, B Zheng, Y Bai, Q Wu, J Wu, L Sun, Q Liu, M Liu, Y Yang, ... British Journal of Cancer 125 (8), 1111-1121, 2021 | 44 | 2021 |
| Generative pretraining from large-scale transcriptomes for single-cell deciphering H Shen, J Liu, J Hu, X Shen, C Zhang, D Wu, M Feng, M Yang, Y Li, ... Iscience 26 (5), 2023 | 20 | 2023 |
| A Multiparametric Fusion Radiomics Signature Based on Contrast‐Enhanced MRI for Predicting Early Recurrence of Hepatocellular Carcinoma W Li, H Shen, L Han, J Liu, B Xiao, X Li, Z Ye Journal of Oncology 2022 (1), 3704987, 2022 | 10 | 2022 |
| Miscell: An efficient self-supervised learning approach for dissecting single-cell transcriptome H Shen, Y Li, M Feng, X Shen, D Wu, C Zhang, Y Yang, M Yang, J Hu, ... Iscience 24 (11), 2021 | 9 | 2021 |
| Transcriptomic analysis identified two subtypes of brain tumor characterized by distinct immune infiltration and prognosis X Shen, X Wang, H Shen, M Feng, D Wu, Y Yang, Y Li, M Yang, W Ji, ... Frontiers in Oncology 11, 734407, 2021 | 8 | 2021 |
| Prediction of two molecular subtypes of gastric cancer based on immune signature D Wu, M Feng, H Shen, X Shen, J Hu, J Liu, Y Yang, Y Li, M Yang, ... Frontiers in Genetics 12, 793494, 2022 | 7 | 2022 |
| A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings H Shen, X Shen, M Feng, D Wu, C Zhang, Y Yang, M Yang, J Hu, J Liu, ... Briefings in Bioinformatics 23 (2), bbab573, 2022 | 6 | 2022 |
| Generative pretraining from large-scale transcriptomes: Implications for single-cell deciphering and clinical translation H Shen, X Shen, J Hu, J Liu, C Zhang, D Wu, M Feng, M Yang, Y Li, ... bioRxiv, 2022.01. 31.478596, 2022 | 5 | 2022 |
| Development of a deep learning model for cancer diagnosis by inspecting cell-free DNA end-motifs H Shen, M Yang, J Liu, K Chen, X Li NPJ Precision Oncology 8 (1), 160, 2024 | 3 | 2024 |
| Language model enables end-to-end accurate detection of cancer from cell-free DNA H Shen, J Liu, K Chen, X Li Briefings in Bioinformatics 25 (2), bbae053, 2024 | 3 | 2024 |
| An efficient context-aware approach for whole-slide image classification H Shen, J Wu, X Shen, J Hu, J Liu, Q Zhang, Y Sun, K Chen, X Li Iscience 26 (12), 2023 | 3 | 2023 |
| Large language model produces high accurate diagnosis of cancer from end-motif profiles of cell-free DNA J Liu, H Shen, K Chen, X Li Briefings in Bioinformatics 25 (5), bbae430, 2024 | 2 | 2024 |
| Macrophage-coated tumor cluster aggravates hepatoma invasion and immunotherapy resistance via generating local immune deprivation J Ning, Y Ye, H Shen, R Zhang, H Li, T Song, R Zhang, P Liu, G Chen, ... Cell Reports Medicine 5 (5), 2024 | 2 | 2024 |
| Scalable batch-correction approach for integrating large-scale single-cell transcriptomes X Shen, H Shen, D Wu, M Feng, J Hu, J Liu, Y Yang, M Yang, Y Li, L Shi, ... Briefings in Bioinformatics 23 (5), bbac327, 2022 | 1 | 2022 |
| An immunomodulatory signature of responsiveness to immune checkpoint blockade therapy H Shen, X Shen, D Wu, M Feng, Y Yang, Y Li, M Yang, W Wang, Q Zhang, ... Clinical and Translational Medicine 10 (8), 2020 | 1 | 2020 |
| Transformer‐based representation learning and multiple‐instance learning for cancer diagnosis exclusively from raw sequencing fragments of bisulfite‐treated plasma cell‐free DNA J Liu, H Shen, Y Yang, M Yang, Q Zhang, K Chen, X Li Molecular Oncology 18 (11), 2755-2769, 2024 | | 2024 |
| A deep learning approach for cancer diagnosis exclusively from raw sequencing fragments of bisulfite-treated plasma cell-free DNA J Liu, H Shen, J Hu, X Shen, C Zhang, Y Yang, M Yang, W Wang, Y Li, ... medRxiv, 2023.08. 08.23293813, 2023 | | 2023 |
| A single-cell atlas reveals tumor heterogeneity and immune environment of acral melanoma J Yang, C Zhang, H Shen, T Yang, T Li, X Liu, J Wang, Z Liao, J Wei, J Lu, ... | | 2021 |
| Scalable Batch-Correction Method for Integrating Large-Scale Single-Cell Transcriptomes X Shen, H Shen, D Wu, M Feng, J Hu, J Liu, Y Yang, M Yang, Y Li, L Shi, ... Available at SSRN 4013916, 0 | | |
