The emerging landscape of single-molecule protein sequencing technologies JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard, XF Van Kooten, ... Nature methods 18 (6), 604-617, 2021 | 260 | 2021 |
Mass spectrometry-based identification of MHC-associated peptides S Kote, A Pirog, G Bedran, J Alfaro, I Dapic Cancers 12 (3), 535, 2020 | 39 | 2020 |
Interpreting bert architecture predictions for peptide presentation by mhc class i proteins HC Gasser, G Bedran, B Ren, D Goodlett, J Alfaro, A Rajan arXiv preprint arXiv:2111.07137, 2021 | 9 | 2021 |
The immunopeptidome from a genomic perspective: establishing the noncanonical landscape of MHC class I–associated peptides G Bedran, HC Gasser, K Weke, T Wang, D Bedran, A Laird, C Battail, ... Cancer immunology research 11 (6), 747-762, 2023 | 6 | 2023 |
Unraveling the glycosylated immunopeptidome with HLA-Glyco G Bedran, DA Polasky, Y Hsiao, F Yu, F da Veiga Leprevost, JA Alfaro, ... Nature Communications 14 (1), 3461, 2023 | 5 | 2023 |
A comprehensive review of neurodegenerative manifestations of SARS-CoV-2 D Bedran, G Bedran, S Kote Vaccines 12 (3), 222, 2024 | 3 | 2024 |
The immunopeptidome from a genomic perspective: Establishing immune-relevant regions for cancer vaccine design G Bedran, T Wang, D Pankanin, K Weke, A Laird, C Battail, FM Zanzotto, ... bioRxiv, 2022.01. 13.475872, 2022 | 2 | 2022 |
Multi-Omic Analysis of Esophageal Adenocarcinoma Uncovers Candidate Therapeutic Targets and Cancer-Selective Posttranscriptional Regulation JR O'Neill, MY Mayordomo, G Mitulović, S Al Shboul, G Bedran, J Faktor, ... Molecular & Cellular Proteomics 23 (6), 2024 | 1 | 2024 |
CARMEN: A pan-HLA and pan-cancer proteogenomic database on antigen presentation to support cancer immunotherapy AA Kallor, M Waleron, G Bedran, P Eugénio, C Pesquita, D Faria, ... Cancer Research 83 (7_Supplement), 6577-6577, 2023 | 1 | 2023 |
A comprehensive library of canonical and non-canonical MHC class I antigens for cancer vaccine development. G Bedran, T Wang, D Pankanin, K Weke, A Laird, C Battail, FM Zanzotto, ... bioRxiv, 2022 | 1 | 2022 |
Untranslated regions (UTRs) are a potential novel source of neoantigens for personalised immunotherapy CCT Sng, AA Kallor, BS Simpson, G Bedran, J Alfaro, K Litchfield Frontiers in Immunology 15, 1347542, 2024 | | 2024 |
The Immunopeptidomics Ontology (ImPO) D Faria, P Eugénio, M Contreiras Silva, L Balbi, G Bedran, AA Kallor, ... Database 2024, baae014, 2024 | | 2024 |
Investigating the CHIP/STUB1 pathway and its impact on neurodegeneration D Bedran, E Nita, A Tynan, A Piróg, J Faktor, G Bedran, S Rote, K Ball, ... Intercollegiate Biotechnology Doctoral School of University of Gdańsk and …, 2023 | | 2023 |
HLA-Glyco: A large-scale interrogation of the glycosylated immunopeptidome G Bedran, DA Polasky, Y Hsiao, F Yu, F Veiga Leprevost, JA Alfaro, ... bioRxiv, 2022.12. 05.519200, 2022 | | 2022 |
Multi-omics integration in Esophageal Adenocarcinoma reveals therapeutic targets and EAC-specific regulation of protein abundances JR O’Neill, MY Mayordomo, G Mitulović, S Al Shboul, G Bedran, J Faktor, ... medRxiv, 2022.11. 24.22281691, 2022 | | 2022 |
Bioinformatics strategies for the comprehensive characterization of immunopeptidome landscapes G Bedran, S Kote, MY Mayordomo, K Pawlicka, S Saxena, D Goodlett, ... Molecular Immunology 150, 6, 2022 | | 2022 |
Integrative-omics of UPS and strategies for neoantigen discovery for personalized immunotherapeutics MY Mayordomo, G Bedran, G Grimes, L Hayward, J Factor, A Alsaadi, ... International Centre for Cancer Vaccine Science, 2020 | | 2020 |
Proteogenomics identifies common drugabble pathways in undifferentiated pleomorphic sarcoma MY Mayordomo, G Bedran, L Hayward, J Factor, R O'Neill, B Vojtesek, ... International Centre for Cancer Vaccine Science, 2019 | | 2019 |
Computational and experimental approaches to determine the immuno-peptidome landscape on cancer cells G Bedran, M Mayordomo, S Kote, I Dapic, K Pawlicka, S Saxena, ... International Centre for Cancer Vaccine Science, 2019 | | 2019 |
Bioinformatics strategies for the comprehensive characterization of antigen processing and presentation G Bedran, S Kote, U Kalathiya, M Padariya, M Kurkowiak, MY Mayordomo, ... International Centre for Cancer Vaccine Science, 2019 | | 2019 |