| Space in systems biology of signaling pathways-towards intracellular molecular crowding in silico K Takahashi, SNV Arjunan, M Tomita FEBS letters 579 (8), 1783-1788, 2005 | 315 | 2005 |
| A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation SNV Arjunan, M Tomita Systems and Synthetic Biology 4 (1), 35-53, 2010 | 99 | 2010 |
| An evolutionary firefly algorithm for the estimation of nonlinear biological model parameters A Abdullah, S Deris, S Anwar, SNV Arjunan PloS one 8 (3), e56310, 2013 | 48 | 2013 |
| Particle simulation of oxidation induced band 3 clustering in human erythrocytes H Shimo, SNV Arjunan, H Machiyama, T Nishino, M Suematsu, H Fujita, ... PLOS Computational Biology 11 (6), e1004210, 2015 | 31 | 2015 |
| An improved local best searching in particle swarm optimization using differential evolution A Abdullah, S Deris, SZM Hashim, MS Mohamad, SNV Arjunan 2011 11th International Conference on Hybrid Intelligent Systems (HIS), 115-120, 2011 | 24 | 2011 |
| A computational framework for bioimaging simulation M Watabe, SNV Arjunan, S Fukushima, K Iwamoto, J Kozuka, S Matsuoka, ... PloS one 10 (7), e0130089, 2015 | 16 | 2015 |
| Sequential logic model deciphers dynamic transcriptional control of gene expressions ZX Yeo, ST Wong, SNV Arjunan, V Piras, M Tomita, K Selvarajoo, ... PLoS ONE 2 (8), e776, 2007 | 16 | 2007 |
| Reaction-diffusion kinetics on lattice at the microscopic scale WX Chew, K Kaizu, M Watabe, SV Muniandy, K Takahashi, SNV Arjunan Physical Review E 98 (3), 032418, 2018 | 14 | 2018 |
| Surface reaction-diffusion kinetics on lattice at the microscopic scale WX Chew, K Kaizu, M Watabe, SV Muniandy, K Takahashi, SNV Arjunan Physical Review E 99 (4), 042411, 2019 | 13 | 2019 |
| E-Cell System Version 3: A Software Platform for Integrative Computational Biology K Takahashi, T Sakurada, K Kaizu, T Kitayama, S Arjunan, T Ishida, ... Genome Informatics Series, 294-295, 2003 | 11 | 2003 |
| pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems SNV Arjunan, A Miyauchi, K Iwamoto, K Takahashi BMC bioinformatics 21, 1-21, 2020 | 10 | 2020 |
| Multi-algorithm particle simulations with Spatiocyte SNV Arjunan, K Takahashi Protein Function Prediction: Methods and Protocols, 219-236, 2017 | 10 | 2017 |
| Decoding the signaling mechanism of toll-like receptor 4 pathways in wild type and knockouts SNV Arjunan, PK Dhar, M Tomita, K Selvarajoo E-Cell System: Basic Concepts and Applications, 157-167, 2013 | 10 | 2013 |
| Modeling reaction-diffusion of molecules on surface and in volume spaces with the E-Cell System SNV Arjunan, M Tomita International Journal of Computer Science and Information Security 3 (1 …, 2009 | 10 | 2009 |
| Shared-Memory Multiprocessing of Gillespie’s Stochastic Simulation Algorithm on E-Cell3 S Arjunan, K Takahashi, M Tomita 4th International Conference on Systems Biology in St. Louis, MO, 2003 | 7 | 2003 |
| Prediction of protein secondary structure SNV Arjunan, S Deris, RM Illias Jurnal Teknologi 35 (1), 81–90, 2001 | 7 | 2001 |
| Signaling activations through G-protein-coupled-receptor aggregations M Watabe, H Yoshimura, SNV Arjunan, K Kaizu, K Takahashi Physical Review E 102 (3), 032413, 2020 | 5 | 2020 |
| 4 Working Groups 4.1 Simulating macromolecular crowding with particle and lattice-based methods (Team 3) SS Andrews, SNV Arjunan, G Balbo, AT Bittig, J Feret, K Kaizu, F Liu Multiscale Spatial Computational Systems Biology, 170, 2015 | 5 | 2015 |
| Simulation of human erythrocyte metabolism SNV Arjunan, PK Dhar, M Tomita, A Kinoshita E-Cell System: Basic Concepts and Applications, 89-104, 2013 | 5 | 2013 |
| Dynamic kinetic modeling of mitochondrial energy metabolism SNV Arjunan, PK Dhar, M Tomita, K Yugi E-Cell System: Basic Concepts and Applications, 105-142, 2013 | 5 | 2013 |
