The HDOCK server for integrated protein–protein docking Y Yan, H Tao, J He, SY Huang Nature protocols 15 (5), 1829-1852, 2020 | 965 | 2020 |
HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy Y Yan, D Zhang, P Zhou, B Li, SY Huang Nucleic acids research 45 (W1), W365-W373, 2017 | 900 | 2017 |
Molecular mechanism of evolution and human infection with SARS-CoV-2 J He, H Tao, Y Yan, SY Huang, Y Xiao Viruses 12 (4), 428, 2020 | 219 | 2020 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 122 | 2019 |
Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking Y Yan, Z Wen, X Wang, SY Huang Proteins: Structure, Function, and Bioinformatics 85 (3), 497-512, 2017 | 119 | 2017 |
IL-6 regulates autophagy and chemotherapy resistance by promoting BECN1 phosphorylation F Hu, D Song, Y Yan, C Huang, C Shen, J Lan, Y Chen, A Liu, Q Wu, ... Nature communications 12 (1), 3651, 2021 | 116 | 2021 |
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 96 | 2021 |
Hierarchical flexible peptide docking by conformer generation and ensemble docking of peptides P Zhou, B Li, Y Yan, B Jin, L Wang, SY Huang Journal of Chemical Information and Modeling 58 (6), 1292-1302, 2018 | 67 | 2018 |
Efficient conformational ensemble generation of protein-bound peptides Y Yan, DI Zhang, SY Huang Journal of cheminformatics 9, 1-13, 2017 | 62 | 2017 |
Accurate prediction of inter-protein residue–residue contacts for homo-oligomeric protein complexes Y Yan, SY Huang Briefings in bioinformatics 22 (5), bbab038, 2021 | 57 | 2021 |
HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry Y Yan, H Tao, SY Huang Nucleic acids research 46 (W1), W423-W431, 2018 | 46 | 2018 |
Pushing the accuracy limit of shape complementarity for protein-protein docking Y Yan, SY Huang BMC bioinformatics 20, 1-10, 2019 | 43 | 2019 |
Docking and scoring for nucleic acid–ligand interactions: Principles and current status Y Feng, Y Yan, J He, H Tao, Q Wu, SY Huang Drug Discovery Today 27 (3), 838-847, 2022 | 29 | 2022 |
DeepHomo2. 0: improved protein–protein contact prediction of homodimers by transformer-enhanced deep learning P Lin, Y Yan, SY Huang Briefings in Bioinformatics 24 (1), bbac499, 2023 | 21 | 2023 |
Modeling protein–protein or protein–DNA/RNA complexes using the HDOCK webserver Y Yan, SY Huang Protein Structure Prediction, 217-229, 2020 | 21 | 2020 |
Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes P Lin, Y Yan, H Tao, SY Huang Nature Communications 14 (1), 4935, 2023 | 11 | 2023 |
Protein-protein docking with improved shape complementarity Y Yan, SY Huang Intelligent Computing Theories and Application: 14th International …, 2018 | 11 | 2018 |
Challenges and opportunities of automated protein‐protein docking: HDOCK server vs human predictions in CAPRI Rounds 38‐46 Y Yan, J He, Y Feng, P Lin, H Tao, SY Huang Proteins: Structure, Function, and Bioinformatics 88 (8), 1055-1069, 2020 | 10 | 2020 |
A non-redundant benchmark for symmetric protein docking Y Yan, SY Huang Big Data Mining and Analytics 2 (2), 92-99, 2019 | 10 | 2019 |
Ion selectivity and rotor coupling of the Vibrio flagellar sodium-driven stator unit H Hu, PF Popp, M Santiveri, A Roa-Eguiara, Y Yan, FJO Martin, Z Liu, ... Nature communications 14 (1), 4411, 2023 | 9 | 2023 |