Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1446 | 2022 |
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 533 | 2022 |
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 195 | 2021 |
Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... MedRxiv, 2022.05. 01.22274406, 2022 | 108 | 2022 |
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 95 | 2022 |
Rapid replacement of the Beta variant by the Delta variant in South Africa H Tegally, E Wilkinson, CL Althaus, M Giovanetti, JE San, J Giandhari, ... MedRxiv, 2021.09. 23.21264018, 2021 | 54 | 2021 |
Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq D Tshiabuila, J Giandhari, S Pillay, U Ramphal, Y Ramphal, A Maharaj, ... BMC genomics 23 (1), 319, 2022 | 35 | 2022 |
A novel variant of interest of SARS-CoV-2 with multiple spike mutations detected through travel surveillance in Africa T de Oliveira, S Lutucuta, J Nkengasong, J Morais, JP Paixão, Z Neto, ... MedRxiv, 2021.03. 30.21254323, 2021 | 33 | 2021 |
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Molecular epidemiology and diversity of SARS-CoV-2 in Ethiopia, 2020–2022 A Sisay, D Tshiabuila, S van Wyk, A Tesfaye, G Mboowa, SO Oyola, ... Genes 14 (3), 705, 2023 | 10 | 2023 |
Molecular epidemiology of SARS-CoV-2 during five COVID-19 waves and the significance of low-frequency lineages K Subramoney, N Mtileni, J Giandhari, Y Naidoo, Y Ramphal, S Pillay, ... Viruses 15 (5), 1194, 2023 | 4 | 2023 |
Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique N Ismael, S van Wyk, H Tegally, J Giandhari, JE San, M Moir, S Pillay, ... PLOS global public health 3 (3), e0001593, 2023 | 3 | 2023 |
Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing S Pillay, JE San, D Tshiabuila, Y Naidoo, Y Pillay, A Maharaj, UJ Anyaneji, ... Plos one 18 (4), e0283219, 2023 | 2 | 2023 |
Insights into SARS‐CoV‐2 in Angola during the COVID‐19 peak: Molecular epidemiology and genome surveillance NM Francisco, S Van Wyk, M Moir, JE San, CS Sebastião, H Tegally, ... Influenza and Other Respiratory Viruses 17 (9), e13198, 2023 | 1 | 2023 |
Complete Hepatitis B Virus Sequencing using an ONT-Based Next-Generation Sequencing Protocol WT CHOGA, LB Chabuka, T Maponga, D Tshiabuila, JE San, H Tegally, ... | 1 | 2023 |
Performance of rapid antigen tests in identifying Omicron BA. 4 and BA. 5 infections in South Africa N Samsunder, G Lustig, M de Vos, S Ngcapu, J Giandhari, D Tshiabuila, ... Journal of Clinical Virology 165, 105498, 2023 | 1 | 2023 |
Reflective Evaluation of Next-Generation Sequencing Data during Early Phase Detection of the Delta Variant U Ramphal, D Tshiabuila, Y Ramphal, J Giandhari, C van Heerden, ... OBM Genetics 8 (2), 1-42, 2024 | | 2024 |
An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings D Tshiabuila, W Choga, SE James, T Maponga, W Preiser, G van Zyl, ... medRxiv, 2024.01. 19.24301519, 2024 | | 2024 |
Correction: Subramoney et al. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. Viruses 2023, 15, 1194 K Subramoney, N Mtileni, J Giandhari, Y Naidoo, Y Ramphal, S Pillay, ... Viruses 15 (7), 1502, 2023 | | 2023 |
Insights into SARS-CoV-2 in Angola during the COVID-19 Peak: Molecular Epidemiology and Genome Surveillance F NM, SV Wyk, M Moir, J San, C Sebastiao, H Tegally, J Xavier, A Maharaj, ... | | 2023 |