Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics G Zhao, JR Perilla, EL Yufenyuy, X Meng, B Chen, J Ning, J Ahn, ... Nature 497 (7451), 643-646, 2013 | 934 | 2013 |
Molecular dynamics simulations of large macromolecular complexes JR Perilla, BC Goh, CK Cassidy, B Liu, RC Bernardi, T Rudack, H Yu, ... Current opinion in structural biology 31, 64-74, 2015 | 448 | 2015 |
Inositol phosphates are assembly co-factors for HIV-1 RA Dick, KK Zadrozny, C Xu, FKM Schur, TD Lyddon, CL Ricana, ... Nature 560 (7719), 509-512, 2018 | 214 | 2018 |
Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations JR Perilla, K Schulten Nature communications 8 (1), 1-10, 2017 | 175 | 2017 |
Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site C Liu, JR Perilla, J Ning, M Lu, G Hou, R Ramalho, BA Himes, G Zhao, ... Nature communications 7 (1), 10714, 2016 | 171 | 2016 |
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open↔ closed transitions O Beckstein, EJ Denning, JR Perilla, TB Woolf Journal of molecular biology 394 (1), 160-176, 2009 | 154 | 2009 |
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao, JR Perilla, K Schulten, ... Elife 4, e08419, 2015 | 120 | 2015 |
All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits JA Hadden, JR Perilla, CJ Schlicksup, B Venkatakrishnan, A Zlotnick, ... Elife 7, e32478, 2018 | 96 | 2018 |
All-atom molecular dynamics of virus capsids as drug targets JR Perilla, JA Hadden, BC Goh, CG Mayne, K Schulten The journal of physical chemistry letters 7 (10), 1836-1844, 2016 | 93 | 2016 |
Ictal propagation of high frequency activity is recapitulated in interictal recordings: effective connectivity of epileptogenic networks recorded with intracranial EEG A Korzeniewska, MC Cervenka, CC Jouny, JR Perilla, J Harezlak, ... Neuroimage 101, 96-113, 2014 | 93 | 2014 |
Dynamic allostery governs cyclophilin A–HIV capsid interplay M Lu, G Hou, H Zhang, CL Suiter, J Ahn, IJL Byeon, JR Perilla, ... Proceedings of the National Academy of Sciences 112 (47), 14617-14622, 2015 | 86 | 2015 |
FEZ1 is recruited to a conserved cofactor site on capsid to promote HIV-1 trafficking PT Huang, BJ Summers, C Xu, JR Perilla, V Malikov, MH Naghavi, ... Cell reports 28 (9), 2373-2385. e7, 2019 | 69 | 2019 |
Molecular architecture of the retroviral capsid JR Perilla, AM Gronenborn Trends in biochemical sciences 41 (5), 410-420, 2016 | 66 | 2016 |
Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR M Lu, RW Russell, AJ Bryer, CM Quinn, G Hou, H Zhang, CD Schwieters, ... Nature structural & molecular biology 27 (9), 863-869, 2020 | 62 | 2020 |
Dynamic regulation of HIV-1 capsid interaction with the restriction factor TRIM5α identified by magic-angle spinning NMR and molecular dynamics simulations CM Quinn, M Wang, MP Fritz, B Runge, J Ahn, C Xu, JR Perilla, ... Proceedings of the National Academy of Sciences 115 (45), 11519-11524, 2018 | 58 | 2018 |
CryoEM structure of MxB reveals a novel oligomerization interface critical for HIV restriction FJD Alvarez, S He, JR Perilla, S Jang, K Schulten, AN Engelman, ... Science advances 3 (9), e1701264, 2017 | 58 | 2017 |
Quenching protein dynamics interferes with HIV capsid maturation M Wang, CM Quinn, JR Perilla, H Zhang, R Shirra Jr, G Hou, IJ Byeon, ... Nature Communications 8 (1), 1779, 2017 | 57 | 2017 |
HIV-1 capsid function is regulated by dynamics: Quantitative atomic-resolution insights by integrating magic-angle-spinning NMR, QM/MM, and MD H Zhang, G Hou, M Lu, J Ahn, IJL Byeon, CJ Langmead, JR Perilla, ... Journal of the American Chemical Society 138 (42), 14066-14075, 2016 | 53 | 2016 |
Computing ensembles of transitions from stable states: Dynamic importance sampling JR Perilla, O Beckstein, EJ Denning, TB Woolf Journal of computational chemistry 32 (2), 196-209, 2011 | 52 | 2011 |
Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis C Xu, DK Fischer, S Rankovic, W Li, RA Dick, B Runge, R Zadorozhnyi, ... PLoS biology 18 (12), e3001015, 2020 | 48 | 2020 |