KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1082 | 2018 |
The MG-RAST metagenomics database and portal in 2015 A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ... Nucleic acids research 44 (D1), D590-D594, 2016 | 223 | 2016 |
Taxonomic Classification of Metagenomic Shotgun Sequences with CARMA3 W Gerlach, J Stoye Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics …, 2015 | 159* | 2015 |
Taxonomic classification of metagenomic shotgun sequences with CARMA3 W Gerlach, J Stoye Nucleic acids research 39 (14), e91-e91, 2011 | 159 | 2011 |
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ... Briefings in bioinformatics 20 (4), 1151-1159, 2019 | 137 | 2019 |
Skyport – Container-Based Execution Environment Management for Multi-Cloud Scientific Workflows W Gerlach, W Tang, KP Keegan, T Harrison, A Wilke, J Bischof, ... Proceedings of the 5th International Workshop on Data Intensive Computing in …, 2014 | 133 | 2014 |
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads W Gerlach, S Jünemann, F Tille, A Goesmann, J Stoye Bmc Bioinformatics 10, 1-10, 2009 | 113 | 2009 |
A RESTful API for accessing microbial community data for MG-RAST A Wilke, J Bischof, T Harrison, T Brettin, MD Souza, W Gerlach, ... PLOS Computational Biology, 2015 | 86 | 2015 |
The DOE Systems Biology Knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... bioRxiv, 096354, 2016 | 79 | 2016 |
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads A Mahgoub, P Wood, S Ganesh, S Mitra, W Gerlach, T Harrison, F Meyer, ... Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, 28-40, 2017 | 72 | 2017 |
GUUGle: a utility for fast exact matching under RNA complementary rules including G–U base pairing W Gerlach, R Giegerich Bioinformatics 22 (6), 762-764, 2006 | 72 | 2006 |
A Scalable Data Analysis Platform for Metagenomics W Tang, J Wilkening, N Desai, W Gerlach, A Wilke, F Meyer IEEE International Conference on Big Data, 2013 | 44 | 2013 |
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma B Henrich, M Rumming, A Sczyrba, E Velleuer, R Dietrich, W Gerlach, ... PloS one 9 (3), e92297, 2014 | 42 | 2014 |
Engineering a compressed suffix tree implementation N Välimäki, V Mäkinen, W Gerlach, K Dixit Journal of Experimental Algorithmics (JEA) 14, 4.2-4.23, 2010 | 36 | 2010 |
Compressed suffix tree—a basis for genome-scale sequence analysis N Välimäki, W Gerlach, K Dixit, V Mäkinen Bioinformatics 23 (5), 629-630, 2007 | 36 | 2007 |
Container Orchestration for Scientific Workflows W Gerlach, W Tang, A Wilke, D Olson, F Meyer | 29 | 2015 |
A metagenomics portal for a democratized sequencing world A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D’Souza, ... Methods in enzymology 531, 487-523, 2013 | 23 | 2013 |
Engineering a compressed suffix tree implementation N Välimäki, W Gerlach, K Dixit, V Mäkinen 6th Workshop on Experimental Algorithms, 217-228, 2007 | 18 | 2007 |
Workload Characterization for MG-RAST Metagenomic Data Analytics Service in the Cloud W Tang, J Bischof, N Desai, K Mahadik, W Gerlach, T Harrison, A Wilke, ... | 13 | 2014 |
Dynamic FM-Index for a collection of texts with application to space-efficient construction of the compressed suffix array W Gerlach Diploma thesis, Universität Bielefeld, Germany, 2007 | 11 | 2007 |