Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting C Solís-Lemus, C Ané PLoS Genet: e1005896, doi:10.1371/journal.pgen.1005896 12 (3), 2015 | 416 | 2015 |
PhyloNetworks: a package for phylogenetic networks C Solís-Lemus, P Bastide, C Ané Molecular biology and evolution 34 (12), 3292-3298, 2017 | 311 | 2017 |
Bayesian species delimitation combining multiple genes and traits in a unified framework C Solís-Lemus, LL Knowles, C Ané Evolution 69 (2), 492-507, 2015 | 194 | 2015 |
Inconsistency of species tree methods under gene flow C Solís-Lemus, M Yang, C Ané Systematic biology 65 (5), 843-851, 2016 | 159 | 2016 |
Phylogenetic comparative methods on phylogenetic networks with reticulations P Bastide, C Solís-Lemus, R Kriebel, K William Sparks, C Ané Systematic biology 67 (5), 800-820, 2018 | 91 | 2018 |
Genes influencing phage host range in Staphylococcus aureus on a species-wide scale AG Moller, K Winston, S Ji, J Wang, MN Hargita Davis, CR Solís-Lemus, ... Msphere 6 (1), 10.1128/msphere. 01263-20, 2021 | 22 | 2021 |
Greatly reduced phylogenetic structure in the cultivated potato clade (Solanum section Petota pro parte) DM Spooner, H Ruess, CI Arbizu, F Rodríguez, C Solís‐Lemus American Journal of Botany 105 (1), 60-70, 2018 | 20 | 2018 |
Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains M Su, JT Lyles, RA Petit III, J Peterson, M Hargita, H Tang, C Solis-Lemus, ... PeerJ 8, e8717, 2020 | 15 | 2020 |
Adversarial Principal Component Analysis D Pimentel-Alarcón, A Biswas, C Solís-Lemus IEEE International Symposium on Information Theory, 2017 | 15 | 2017 |
Classification of animal sounds in a hyperdiverse rainforest using convolutional neural networks with data augmentation Y Sun, TM Maeda, C Solís-Lemus, D Pimentel-Alarcón, Z Buřivalová Ecological Indicators 145, 109621, 2022 | 12* | 2022 |
Phasing alleles improves network inference with allopolyploids GP Tiley, AA Crowl, PS Manos, EB Sessa, C Solís-Lemus, AD Yoder, ... BioRxiv, 2021 | 12 | 2021 |
Statistical evidence for common ancestry: Application to primates DA Baum, C Ané, B Larget, C Solís-Lemus, LST Ho, P Boone, ... Evolution 70 (6), 1354-1363, 2016 | 12 | 2016 |
Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA) M Su, MH Davis, J Peterson, C Solis-Lemus, SW Satola, TD Read PeerJ 9, e11764, 2021 | 9 | 2021 |
On the identifiability of phylogenetic networks under a pseudolikelihood model C Solis-Lemus, A Coen, C Ane arXiv preprint arXiv:2010.01758, 2020 | 8 | 2020 |
SiPhyNetwork: An R package for simulating phylogenetic networks JA Justison, C Solis‐Lemus, TA Heath Methods in Ecology and Evolution 14 (7), 1687-1698, 2023 | 7 | 2023 |
Accurate phylogenetic inference with a symmetry-preserving neural network model C Solis-Lemus, S Yang, L Zepeda-Nunez arXiv e-prints, arXiv: 2201.04663, 2022 | 7 | 2022 |
Machine learning identification of Pseudomonas aeruginosa strains from colony image data JB Rattray, RJ Lowhorn, R Walden, P Márquez-Zacarías, E Molotkova, ... PLOS Computational Biology 19 (12), e1011699, 2023 | 4 | 2023 |
Detectability of varied hybridization scenarios using genome-scale hybrid detection methods M Bjorner, EK Molloy, CN Dewey, C Solis-Lemus arXiv preprint arXiv:2211.00712, 2022 | 4 | 2022 |
Efficient estimation of indirect effects in case‐control studies using a unified likelihood framework GA Satten, SW Curtis, C Solis‐Lemus, EJ Leslie, MP Epstein Statistics in medicine 41 (15), 2879-2893, 2022 | 4 | 2022 |
Bayesian Chain Graph LASSO Models to Learn Sparse Microbial Networks with Predictors Y Shen, C Solis-Lemus arXiv preprint arXiv:2012.08397, 2020 | 4 | 2020 |